miRNA display CGI


Results 41 - 60 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5139 3' -67.5 NC_001798.1 + 150701 0.66 0.412683
Target:  5'- cGCCU-GCgCgCGCCCCCCGccGGCCgCa -3'
miRNA:   3'- aUGGAcCGgGgGCGGGGGGU--CUGGgG- -5'
5139 3' -67.5 NC_001798.1 + 126278 0.66 0.412683
Target:  5'- cGCCcaagcGGCCCCU-CCCCCCGagacGGCgCCg -3'
miRNA:   3'- aUGGa----CCGGGGGcGGGGGGU----CUGgGG- -5'
5139 3' -67.5 NC_001798.1 + 97004 0.66 0.412683
Target:  5'- gGCC-GGCCCgCCGCCCgCCGauaGCUCUu -3'
miRNA:   3'- aUGGaCCGGG-GGCGGGgGGUc--UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 73218 0.66 0.412683
Target:  5'- cGCCUcggcguuucGGCCuUCCGCCggCCCggGGGCCCCc -3'
miRNA:   3'- aUGGA---------CCGG-GGGCGGg-GGG--UCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 68938 0.66 0.412683
Target:  5'- aACC-GGUCCagCCGCgCCCCGG-CCCg -3'
miRNA:   3'- aUGGaCCGGG--GGCGgGGGGUCuGGGg -5'
5139 3' -67.5 NC_001798.1 + 29017 0.66 0.412683
Target:  5'- cGCCgcgcgGGCCCggacuCCGCCCCggcgaCC--GCCCCg -3'
miRNA:   3'- aUGGa----CCGGG-----GGCGGGG-----GGucUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 154436 0.66 0.420823
Target:  5'- gGCa--GCCCCgCGCgCCCCCuu-CCCCg -3'
miRNA:   3'- aUGgacCGGGG-GCG-GGGGGucuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 7175 0.66 0.412683
Target:  5'- gACCgacgGGCCCCCGCa-CCgGGGCggcgaCCa -3'
miRNA:   3'- aUGGa---CCGGGGGCGggGGgUCUGg----GG- -5'
5139 3' -67.5 NC_001798.1 + 122428 0.66 0.41026
Target:  5'- gGCCUGuGCCgCCGagcgcgucgugcgcCCCCaCCAGcuguCCCCc -3'
miRNA:   3'- aUGGAC-CGGgGGC--------------GGGG-GGUCu---GGGG- -5'
5139 3' -67.5 NC_001798.1 + 31105 0.66 0.404641
Target:  5'- cUGCagUGGacuacgucCCgCCCGCCCCCCGaagagcGCCCCg -3'
miRNA:   3'- -AUGg-ACC--------GG-GGGCGGGGGGUc-----UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 134990 0.66 0.404641
Target:  5'- gGCCUGGCCCgcggugggcgCCagggucguccuGCCCCCgCGGGCauggCCg -3'
miRNA:   3'- aUGGACCGGG----------GG-----------CGGGGG-GUCUGg---GG- -5'
5139 3' -67.5 NC_001798.1 + 110913 0.66 0.404641
Target:  5'- ----cGGCCagCCGCCCCCgCcGGCCCg -3'
miRNA:   3'- auggaCCGGg-GGCGGGGG-GuCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 85684 0.66 0.404641
Target:  5'- gUGCCcgGGCgCCaCGCCCagaagcaaCCCAGGCCg- -3'
miRNA:   3'- -AUGGa-CCGgGG-GCGGG--------GGGUCUGGgg -5'
5139 3' -67.5 NC_001798.1 + 66826 0.66 0.404641
Target:  5'- aGCCcGGCCCggugCCGgCgCCCAGGCCg- -3'
miRNA:   3'- aUGGaCCGGG----GGCgGgGGGUCUGGgg -5'
5139 3' -67.5 NC_001798.1 + 62255 0.66 0.404641
Target:  5'- gACC--GCCCCgaGCCgaUCCCAGGCCCg -3'
miRNA:   3'- aUGGacCGGGGg-CGG--GGGGUCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 22806 0.66 0.404641
Target:  5'- gACCggcGGCCCCgGaUCUCCGGAUCCa -3'
miRNA:   3'- aUGGa--CCGGGGgCgGGGGGUCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 137241 0.66 0.403843
Target:  5'- cGCCUGGuugcugauccCCUCCGCCaCCucgaCCAGAcugcgguCCCCg -3'
miRNA:   3'- aUGGACC----------GGGGGCGG-GG----GGUCU-------GGGG- -5'
5139 3' -67.5 NC_001798.1 + 29731 0.66 0.402248
Target:  5'- gACCgcgGGCCgCCGUCucgagucuacccuaCCCCGGcucauggaACCCCg -3'
miRNA:   3'- aUGGa--CCGGgGGCGG--------------GGGGUC--------UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 139851 0.66 0.396699
Target:  5'- -cCCUGGCcagcagCCCCGCCUCgCUggaAGACCUg -3'
miRNA:   3'- auGGACCG------GGGGCGGGG-GG---UCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 70115 0.66 0.396699
Target:  5'- -uCCaGGUCCCggCGCCCgCCGgcauGACCCCc -3'
miRNA:   3'- auGGaCCGGGG--GCGGGgGGU----CUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.