miRNA display CGI


Results 81 - 100 of 271 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 3' -64.6 NC_001798.1 + 81000 0.67 0.482233
Target:  5'- gGUCUugugggaaGCC-CCGGAGCCccccgGCCCCCCu -3'
miRNA:   3'- -CAGG--------CGGcGGCUUCGGcag--CGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 37847 0.67 0.482233
Target:  5'- uUCUGCCGCgCGAgcGGCCGU-GCCgCUUg -3'
miRNA:   3'- cAGGCGGCG-GCU--UCGGCAgCGGgGGG- -5'
5140 3' -64.6 NC_001798.1 + 32576 0.67 0.481346
Target:  5'- -gCCGCgGCCcccgcguGGAGCCGcCGCaCCCUg -3'
miRNA:   3'- caGGCGgCGG-------CUUCGGCaGCG-GGGGg -5'
5140 3' -64.6 NC_001798.1 + 32851 0.67 0.473398
Target:  5'- -cUUGCUGcCCGAAGgaaGcCGCCCCCCa -3'
miRNA:   3'- caGGCGGC-GGCUUCgg-CaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 28959 0.67 0.473398
Target:  5'- -cCCGgCGCCGccccGCCGcucCGCCCgCCCc -3'
miRNA:   3'- caGGCgGCGGCuu--CGGCa--GCGGG-GGG- -5'
5140 3' -64.6 NC_001798.1 + 27984 0.67 0.464645
Target:  5'- -cCCGgCGCUccAGCCGUgcCGCgCCCCg -3'
miRNA:   3'- caGGCgGCGGcuUCGGCA--GCGgGGGG- -5'
5140 3' -64.6 NC_001798.1 + 133471 0.67 0.464645
Target:  5'- -gCCGaCGCCcuGAGCgGcUGCCCCCCg -3'
miRNA:   3'- caGGCgGCGGc-UUCGgCaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 24476 0.67 0.464645
Target:  5'- -cUCGCCGCCcuggggcgccuGAGcGCCG-CGCCCgCCu -3'
miRNA:   3'- caGGCGGCGG-----------CUU-CGGCaGCGGGgGG- -5'
5140 3' -64.6 NC_001798.1 + 35211 0.67 0.464645
Target:  5'- cGUUCGuuGCU---GCCG-CGCCCCCg -3'
miRNA:   3'- -CAGGCggCGGcuuCGGCaGCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 86073 0.67 0.464645
Target:  5'- -cCCGCCGUCugGGAGUCGggGCCCCg- -3'
miRNA:   3'- caGGCGGCGG--CUUCGGCagCGGGGgg -5'
5140 3' -64.6 NC_001798.1 + 105270 0.67 0.464645
Target:  5'- aUCCGCCucuucgGCCGcGGCCGcCGCggUCUCCa -3'
miRNA:   3'- cAGGCGG------CGGCuUCGGCaGCG--GGGGG- -5'
5140 3' -64.6 NC_001798.1 + 26186 0.68 0.455977
Target:  5'- -cCCGgCGCUGGacGGCCGggcCGCCgCCUCg -3'
miRNA:   3'- caGGCgGCGGCU--UCGGCa--GCGG-GGGG- -5'
5140 3' -64.6 NC_001798.1 + 1191 0.68 0.455977
Target:  5'- -gCCGcCCGCCGcGGCCagcacCGUCCCCg -3'
miRNA:   3'- caGGC-GGCGGCuUCGGca---GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 91819 0.68 0.455977
Target:  5'- -aCCGUgGgCGggGcCCGaCGCCgCCCCu -3'
miRNA:   3'- caGGCGgCgGCuuC-GGCaGCGG-GGGG- -5'
5140 3' -64.6 NC_001798.1 + 120219 0.68 0.455977
Target:  5'- ---gGCC-CCG-GGCCGUUGgCCCCCg -3'
miRNA:   3'- caggCGGcGGCuUCGGCAGCgGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 54454 0.68 0.447397
Target:  5'- -cCCGCCGCUccc-CCGggcUCGCCCCCa -3'
miRNA:   3'- caGGCGGCGGcuucGGC---AGCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 126693 0.68 0.447397
Target:  5'- gGUuuGCCG-UGGAGCuCGUCGCgaCCCUg -3'
miRNA:   3'- -CAggCGGCgGCUUCG-GCAGCGg-GGGG- -5'
5140 3' -64.6 NC_001798.1 + 86964 0.68 0.447397
Target:  5'- cUCUGCCuGCaCGAGcGCCGUCGCUaCCgCg -3'
miRNA:   3'- cAGGCGG-CG-GCUU-CGGCAGCGG-GGgG- -5'
5140 3' -64.6 NC_001798.1 + 42438 0.68 0.447397
Target:  5'- -aCCGCCuGCUGGAucaCCcUCGCCaCCCCa -3'
miRNA:   3'- caGGCGG-CGGCUUc--GGcAGCGG-GGGG- -5'
5140 3' -64.6 NC_001798.1 + 5573 0.68 0.447397
Target:  5'- -cCCGCCgGCCccaaaGggGCCGgcgaggUCGCCCCg- -3'
miRNA:   3'- caGGCGG-CGG-----CuuCGGC------AGCGGGGgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.