miRNA display CGI


Results 61 - 80 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 3' -64.6 NC_001798.1 + 101484 0.67 0.508289
Target:  5'- uUCCGUCGCgugugGggGCCaUCgguucggcuccuaGCCCCCCc -3'
miRNA:   3'- cAGGCGGCGg----CuuCGGcAG-------------CGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 91261 0.67 0.50738
Target:  5'- uUCUGCCGgCGGcaaggcggcgguGCCGUCugggugGCUCCCCg -3'
miRNA:   3'- cAGGCGGCgGCUu-----------CGGCAG------CGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 97031 0.67 0.500136
Target:  5'- uUCUGuCCGCgagGAGGCCGaCGCCCUgCu -3'
miRNA:   3'- cAGGC-GGCGg--CUUCGGCaGCGGGGgG- -5'
5140 3' -64.6 NC_001798.1 + 35530 0.67 0.500136
Target:  5'- cUCCGCCgcgGCCGGcgcgGGgCGUUGCCggcccggcccggCCCCg -3'
miRNA:   3'- cAGGCGG---CGGCU----UCgGCAGCGG------------GGGG- -5'
5140 3' -64.6 NC_001798.1 + 53588 0.67 0.500136
Target:  5'- -cCUGCUcCCGAAGCUGcuggugCGCgCCCCg -3'
miRNA:   3'- caGGCGGcGGCUUCGGCa-----GCGgGGGG- -5'
5140 3' -64.6 NC_001798.1 + 60064 0.67 0.500136
Target:  5'- -cCCGCCGaCCuGGAGCCGcCGgaggaCCgCCCg -3'
miRNA:   3'- caGGCGGC-GG-CUUCGGCaGCg----GG-GGG- -5'
5140 3' -64.6 NC_001798.1 + 87715 0.67 0.500136
Target:  5'- uUCCuCCGCCGuagcGCCG--GCCCCCg -3'
miRNA:   3'- cAGGcGGCGGCuu--CGGCagCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 77054 0.67 0.500136
Target:  5'- -cCCGCCuucguggugguGCUGAAgacccuguucGCCGaCGCCCCCg -3'
miRNA:   3'- caGGCGG-----------CGGCUU----------CGGCaGCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 127747 0.67 0.500136
Target:  5'- -gCCGCCGCaacaccCGgcGCCaagCGCCCCgCg -3'
miRNA:   3'- caGGCGGCG------GCuuCGGca-GCGGGGgG- -5'
5140 3' -64.6 NC_001798.1 + 82307 0.67 0.491147
Target:  5'- gGUCgUGCC-CgGAGGCCcgguugcccGcCGCCCCCCa -3'
miRNA:   3'- -CAG-GCGGcGgCUUCGG---------CaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 127620 0.67 0.491147
Target:  5'- -gCCGCCcgaGCUGAGGCCGcugcuggugcUgGUCUCCCg -3'
miRNA:   3'- caGGCGG---CGGCUUCGGC----------AgCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 32792 0.67 0.491147
Target:  5'- -cCCG-CGCCG--GCCGgcgaCGCCCCCg -3'
miRNA:   3'- caGGCgGCGGCuuCGGCa---GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 47192 0.67 0.491147
Target:  5'- -cUgGCCGCCGGgucAGCCugaGCCCgCCCu -3'
miRNA:   3'- caGgCGGCGGCU---UCGGcagCGGG-GGG- -5'
5140 3' -64.6 NC_001798.1 + 151493 0.67 0.491147
Target:  5'- cGUCCG-UGCacacGGCacacaCGUCGCCCCCCc -3'
miRNA:   3'- -CAGGCgGCGgcu-UCG-----GCAGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 22998 0.67 0.491147
Target:  5'- -cCUGCCGCgGAcGgCGUCGUCUCgCCg -3'
miRNA:   3'- caGGCGGCGgCUuCgGCAGCGGGG-GG- -5'
5140 3' -64.6 NC_001798.1 + 31378 0.67 0.491147
Target:  5'- --aCGCCGCgGcGGCgGagggcaggaCGCCCCCCg -3'
miRNA:   3'- cagGCGGCGgCuUCGgCa--------GCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 36226 0.67 0.491147
Target:  5'- -aCCGCCGCCGc-GCCcgcGUuucUGCCgCCCg -3'
miRNA:   3'- caGGCGGCGGCuuCGG---CA---GCGGgGGG- -5'
5140 3' -64.6 NC_001798.1 + 81000 0.67 0.482233
Target:  5'- gGUCUugugggaaGCC-CCGGAGCCccccgGCCCCCCu -3'
miRNA:   3'- -CAGG--------CGGcGGCUUCGGcag--CGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 26553 0.67 0.482233
Target:  5'- -aCCGCCG-CGggGCUGgccaCGCCgCCg -3'
miRNA:   3'- caGGCGGCgGCuuCGGCa---GCGGgGGg -5'
5140 3' -64.6 NC_001798.1 + 89078 0.67 0.482233
Target:  5'- ---gGCCuucaCGAagaacAGCCGUCgGCCCCCCa -3'
miRNA:   3'- caggCGGcg--GCU-----UCGGCAG-CGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.