miRNA display CGI


Results 41 - 60 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 3' -64.6 NC_001798.1 + 62799 0.66 0.536777
Target:  5'- -aUCGCCGaCCGGuuucuggcgcAGCUGUgggcccacgCGCCCCCg -3'
miRNA:   3'- caGGCGGC-GGCU----------UCGGCA---------GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 152649 0.66 0.535848
Target:  5'- -cCCGCCGgCGcGGCCcugagugGUgccCGCCCCCg -3'
miRNA:   3'- caGGCGGCgGCuUCGG-------CA---GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 96360 0.66 0.534921
Target:  5'- -cCUGCgGCCGGggcuggaggcucaGGCCGcCGCCuuucucaCCCCg -3'
miRNA:   3'- caGGCGgCGGCU-------------UCGGCaGCGG-------GGGG- -5'
5140 3' -64.6 NC_001798.1 + 134925 0.66 0.533994
Target:  5'- -gCCGCCGCCGAgucGGCgCGUgaccuggugcggggCGCCgcggccaCCCa -3'
miRNA:   3'- caGGCGGCGGCU---UCG-GCA--------------GCGGg------GGG- -5'
5140 3' -64.6 NC_001798.1 + 71849 0.66 0.527522
Target:  5'- cGUCgGgCGCCu-AGCCa-CGCCCCCUc -3'
miRNA:   3'- -CAGgCgGCGGcuUCGGcaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 77273 0.66 0.527522
Target:  5'- -gCgGCCGCCcgcGAcccGGCC-UCGCCCCUg -3'
miRNA:   3'- caGgCGGCGG---CU---UCGGcAGCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 81658 0.66 0.527522
Target:  5'- aGUCCccCCGCgGAuGCCG-CGCuuccuCCCCCg -3'
miRNA:   3'- -CAGGc-GGCGgCUuCGGCaGCG-----GGGGG- -5'
5140 3' -64.6 NC_001798.1 + 81805 0.66 0.527522
Target:  5'- cGUCCGCCGgCacuccccGCCccgGUCGCCCCg- -3'
miRNA:   3'- -CAGGCGGCgGcuu----CGG---CAGCGGGGgg -5'
5140 3' -64.6 NC_001798.1 + 106350 0.66 0.527522
Target:  5'- gGUCCGCUGUucgCGuuugcuGGCCGU-GUCCCCg -3'
miRNA:   3'- -CAGGCGGCG---GCu-----UCGGCAgCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 129164 0.66 0.527522
Target:  5'- gGUUCGCCGC--GAGCCcaucuUCGCcaaCCCCCg -3'
miRNA:   3'- -CAGGCGGCGgcUUCGGc----AGCG---GGGGG- -5'
5140 3' -64.6 NC_001798.1 + 15829 0.66 0.527522
Target:  5'- --gCGCCGCCcgguucggGggGCCcgaacgucgggGUCGaCCCCCUc -3'
miRNA:   3'- cagGCGGCGG--------CuuCGG-----------CAGC-GGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 134997 0.66 0.527522
Target:  5'- -cCCGCggugggCGCCaGGGUCGUCcuGCCCCCg -3'
miRNA:   3'- caGGCG------GCGGcUUCGGCAG--CGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 29015 0.67 0.518328
Target:  5'- -gCCGCCGCgCGGGcCCGgacucCGCCCCg- -3'
miRNA:   3'- caGGCGGCG-GCUUcGGCa----GCGGGGgg -5'
5140 3' -64.6 NC_001798.1 + 146485 0.67 0.518328
Target:  5'- cUCCGggGCCGGgccgGGCCGgcaaCGCCCCgCg -3'
miRNA:   3'- cAGGCggCGGCU----UCGGCa---GCGGGGgG- -5'
5140 3' -64.6 NC_001798.1 + 115308 0.67 0.518328
Target:  5'- -gCCGCgcaCGCCGggGaCCuGgugccCGCCCCCg -3'
miRNA:   3'- caGGCG---GCGGCuuC-GG-Ca----GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 80207 0.67 0.517412
Target:  5'- aUCCGCguguUGCCGAcguuuuuGGaCgGagGCCCCCCg -3'
miRNA:   3'- cAGGCG----GCGGCU-------UC-GgCagCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 69070 0.67 0.509198
Target:  5'- -cCCGCgCGCgCGcAGCCGcucUCgGCCCgCCCg -3'
miRNA:   3'- caGGCG-GCG-GCuUCGGC---AG-CGGG-GGG- -5'
5140 3' -64.6 NC_001798.1 + 145989 0.67 0.509198
Target:  5'- cUCCGgcagcaCGCCGAccaccGCCGcCaCCCCCCa -3'
miRNA:   3'- cAGGCg-----GCGGCUu----CGGCaGcGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 4715 0.67 0.509198
Target:  5'- cGUCCGCgGCa--GGCuCGUCgacgGCCuCCCCg -3'
miRNA:   3'- -CAGGCGgCGgcuUCG-GCAG----CGG-GGGG- -5'
5140 3' -64.6 NC_001798.1 + 55003 0.67 0.509198
Target:  5'- cGUCuUGCCGgCGggGCCGcccUGCCgggagacgCCCCg -3'
miRNA:   3'- -CAG-GCGGCgGCuuCGGCa--GCGG--------GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.