miRNA display CGI


Results 41 - 60 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 3' -64.6 NC_001798.1 + 9532 0.74 0.193312
Target:  5'- -cCCGUCGCCGAGGcCCGgcuuuuaacCGCCCgCCa -3'
miRNA:   3'- caGGCGGCGGCUUC-GGCa--------GCGGGgGG- -5'
5140 3' -64.6 NC_001798.1 + 48862 0.73 0.202523
Target:  5'- cUCCGCCGCCGGGcGCuCGggcacgucucauUCGCCUCUCg -3'
miRNA:   3'- cAGGCGGCGGCUU-CG-GC------------AGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 25432 0.73 0.202523
Target:  5'- -gCCGCgCGCUGc-GCCGcccCGCCCCCCg -3'
miRNA:   3'- caGGCG-GCGGCuuCGGCa--GCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 79979 0.73 0.203938
Target:  5'- cGUCCGCCGCCGGgcccccgggggucccAGCgccacugCGUCGCCUUCa -3'
miRNA:   3'- -CAGGCGGCGGCU---------------UCG-------GCAGCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 32097 0.73 0.212114
Target:  5'- cGUCCcagGCCGCgGucGCCGcCGCCUCCUc -3'
miRNA:   3'- -CAGG---CGGCGgCuuCGGCaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 154460 0.73 0.217054
Target:  5'- cGUCCcuCCcCCGGAGCCGgcCGCuCCCCCg -3'
miRNA:   3'- -CAGGc-GGcGGCUUCGGCa-GCG-GGGGG- -5'
5140 3' -64.6 NC_001798.1 + 122 0.73 0.217054
Target:  5'- cGUCCcuCCcCCGGAGCCGgcCGCuCCCCCg -3'
miRNA:   3'- -CAGGc-GGcGGCUUCGGCa-GCG-GGGGG- -5'
5140 3' -64.6 NC_001798.1 + 3376 0.73 0.222092
Target:  5'- -gUCGCCGCCGucGUCGgggguUCGCgCCCCg -3'
miRNA:   3'- caGGCGGCGGCuuCGGC-----AGCGgGGGG- -5'
5140 3' -64.6 NC_001798.1 + 137910 0.73 0.227229
Target:  5'- aUCCGCCuccGCCGGgcGGcCCG-CGCCUCCCc -3'
miRNA:   3'- cAGGCGG---CGGCU--UC-GGCaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 43256 0.73 0.232467
Target:  5'- -gCCGCgauCGCCGggGgCGUCGUgCCCUg -3'
miRNA:   3'- caGGCG---GCGGCuuCgGCAGCGgGGGG- -5'
5140 3' -64.6 NC_001798.1 + 81866 0.73 0.232467
Target:  5'- -gCCGCCcaccCCGGAGuCCG-CGCCCCCg -3'
miRNA:   3'- caGGCGGc---GGCUUC-GGCaGCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 147161 0.72 0.237806
Target:  5'- gGUCCcggguaGCCGcCCGgcGCCGggcggaaggCGUCCCCCg -3'
miRNA:   3'- -CAGG------CGGC-GGCuuCGGCa--------GCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 21717 0.72 0.243247
Target:  5'- cUCCGCCG-CGcAGCCGgugUGCCCCUg -3'
miRNA:   3'- cAGGCGGCgGCuUCGGCa--GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 152227 0.72 0.243247
Target:  5'- gGUCUGCCGCggcggccgcuCGggGCCGggGUCCgCCCg -3'
miRNA:   3'- -CAGGCGGCG----------GCuuCGGCagCGGG-GGG- -5'
5140 3' -64.6 NC_001798.1 + 21654 0.72 0.247674
Target:  5'- -cUCGCCGCCGGcgucucugucucGCUGUgGCCCCCUu -3'
miRNA:   3'- caGGCGGCGGCUu-----------CGGCAgCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 133026 0.72 0.248791
Target:  5'- cGUCgCGCCgGCCGAGGUgGUCGCgCUCa -3'
miRNA:   3'- -CAG-GCGG-CGGCUUCGgCAGCGgGGGg -5'
5140 3' -64.6 NC_001798.1 + 49075 0.72 0.248791
Target:  5'- -cUCGCCGCCcauGcCCGUC-CCCCCCg -3'
miRNA:   3'- caGGCGGCGGcuuC-GGCAGcGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 57163 0.72 0.25444
Target:  5'- -gCUGgCGCCcGGGCCGgCGCCCUCCg -3'
miRNA:   3'- caGGCgGCGGcUUCGGCaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 126468 0.72 0.258456
Target:  5'- gGUCCGagacggccaugaccUCGCCc---CCGUCGCCCCCCu -3'
miRNA:   3'- -CAGGC--------------GGCGGcuucGGCAGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 46394 0.72 0.260193
Target:  5'- -cCCG-CGCCGucuGGCCGgcagggccacCGCCCCCCc -3'
miRNA:   3'- caGGCgGCGGCu--UCGGCa---------GCGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.