miRNA display CGI


Results 21 - 40 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 3' -64.6 NC_001798.1 + 22939 0.76 0.132048
Target:  5'- -gCCGCCGCCGAuGCCGU-GCCgacgaggcggCCCCg -3'
miRNA:   3'- caGGCGGCGGCUuCGGCAgCGG----------GGGG- -5'
5140 3' -64.6 NC_001798.1 + 75173 0.76 0.135284
Target:  5'- cGUCCGUgcucgagaCGCUGggGgcCCGcCGCCCCCCg -3'
miRNA:   3'- -CAGGCG--------GCGGCuuC--GGCaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 82015 0.76 0.145088
Target:  5'- -aCCGCCGCCGcGGCCGcCGCCagacaacagcgggUCCCu -3'
miRNA:   3'- caGGCGGCGGCuUCGGCaGCGG-------------GGGG- -5'
5140 3' -64.6 NC_001798.1 + 153254 0.76 0.145437
Target:  5'- -cCCGCgCGCCGccGCCGcCGCCUCCUc -3'
miRNA:   3'- caGGCG-GCGGCuuCGGCaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 134154 0.75 0.152588
Target:  5'- cUCgGCCcCCGggGCCGUCGCggCCgCCCg -3'
miRNA:   3'- cAGgCGGcGGCuuCGGCAGCG--GG-GGG- -5'
5140 3' -64.6 NC_001798.1 + 31578 0.75 0.152588
Target:  5'- -gCCGCgCGCCcccgcgcGGCCGUCGCCCCgCg -3'
miRNA:   3'- caGGCG-GCGGcu-----UCGGCAGCGGGGgG- -5'
5140 3' -64.6 NC_001798.1 + 75049 0.75 0.152588
Target:  5'- -gUCGCCGCCGAGGUCccCGCCUCCUc -3'
miRNA:   3'- caGGCGGCGGCUUCGGcaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 23061 0.75 0.156281
Target:  5'- -gCCGuUCGCaCGAucCCGUCGCCCCCCc -3'
miRNA:   3'- caGGC-GGCG-GCUucGGCAGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 91331 0.75 0.160056
Target:  5'- --aCGCCGCCcGAGCCGcCGgcuuCCCCCCg -3'
miRNA:   3'- cagGCGGCGGcUUCGGCaGC----GGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 134796 0.75 0.160056
Target:  5'- -gCCGCCcCCGGAGCCcUgGCCCCCg -3'
miRNA:   3'- caGGCGGcGGCUUCGGcAgCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 76910 0.75 0.163912
Target:  5'- -aCCGaCCugGCCGAuGCCGUCcgggGCCCCCCc -3'
miRNA:   3'- caGGC-GG--CGGCUuCGGCAG----CGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 91923 0.74 0.175986
Target:  5'- -aUCGCCGCUGGAGCCuugCGCCCaaaCCu -3'
miRNA:   3'- caGGCGGCGGCUUCGGca-GCGGGg--GG- -5'
5140 3' -64.6 NC_001798.1 + 86888 0.74 0.177654
Target:  5'- uUCCGCCGCCGGgaaccccggcguggaGcGCCGg-GCCUCCCg -3'
miRNA:   3'- cAGGCGGCGGCU---------------U-CGGCagCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 122431 0.74 0.180183
Target:  5'- cUgUGCCGCCGAGcgcGUCGUgCGCCCCCa -3'
miRNA:   3'- cAgGCGGCGGCUU---CGGCA-GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 45518 0.74 0.180183
Target:  5'- cGUUCGCC-CCGGGcCCGU-GCCCCCCg -3'
miRNA:   3'- -CAGGCGGcGGCUUcGGCAgCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 25006 0.74 0.180183
Target:  5'- -aCCGUCGCCGcGGCCGacUCGCUCgCCg -3'
miRNA:   3'- caGGCGGCGGCuUCGGC--AGCGGGgGG- -5'
5140 3' -64.6 NC_001798.1 + 4138 0.74 0.184469
Target:  5'- -gCCGCCcCCGggGCCcUCGCgggcaCCCCCg -3'
miRNA:   3'- caGGCGGcGGCuuCGGcAGCG-----GGGGG- -5'
5140 3' -64.6 NC_001798.1 + 25312 0.74 0.184469
Target:  5'- -gCCGCCGCCcugGAGGCCuacugCGCCCCgCg -3'
miRNA:   3'- caGGCGGCGG---CUUCGGca---GCGGGGgG- -5'
5140 3' -64.6 NC_001798.1 + 23804 0.74 0.184469
Target:  5'- -gCCGUgGcCCGggGCCG--GCCCCCCg -3'
miRNA:   3'- caGGCGgC-GGCuuCGGCagCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 9532 0.74 0.193312
Target:  5'- -cCCGUCGCCGAGGcCCGgcuuuuaacCGCCCgCCa -3'
miRNA:   3'- caGGCGGCGGCUUC-GGCa--------GCGGGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.