miRNA display CGI


Results 21 - 40 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 3' -64.6 NC_001798.1 + 149254 0.66 0.555448
Target:  5'- -gUCGCCgGCCGgcGCgGgcgCGCCCugcuCCCg -3'
miRNA:   3'- caGGCGG-CGGCuuCGgCa--GCGGG----GGG- -5'
5140 3' -64.6 NC_001798.1 + 24866 0.66 0.555448
Target:  5'- -gCCGCCgugcgcGCCGuGAGCCugGUCGCCggggCCCUg -3'
miRNA:   3'- caGGCGG------CGGC-UUCGG--CAGCGG----GGGG- -5'
5140 3' -64.6 NC_001798.1 + 48357 0.66 0.555448
Target:  5'- -aCCGCgGCCGc--CCGggGCCgCCCCg -3'
miRNA:   3'- caGGCGgCGGCuucGGCagCGG-GGGG- -5'
5140 3' -64.6 NC_001798.1 + 80785 0.66 0.555448
Target:  5'- cUCgCGCC-CCGGcgGGCCGgaCGCCgCCCu -3'
miRNA:   3'- cAG-GCGGcGGCU--UCGGCa-GCGGgGGG- -5'
5140 3' -64.6 NC_001798.1 + 146598 0.66 0.555448
Target:  5'- -gCCGCggCGCCaGcGGCCcaCGCCUCCCg -3'
miRNA:   3'- caGGCG--GCGG-CuUCGGcaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 19984 0.66 0.555448
Target:  5'- -cCCGCCGgacgcggauuCCGGguucucccggccGGCCGgggaggGCCCCCCc -3'
miRNA:   3'- caGGCGGC----------GGCU------------UCGGCag----CGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 139279 0.66 0.555448
Target:  5'- -cCCaGCCGUCcucgGggGCgcauagcgccgCGUCGCCgCCCCg -3'
miRNA:   3'- caGG-CGGCGG----CuuCG-----------GCAGCGG-GGGG- -5'
5140 3' -64.6 NC_001798.1 + 81916 0.66 0.552634
Target:  5'- uUCCGCCcgGCCccgccucggcucgcGggGCCuuuccCGCCCCCa -3'
miRNA:   3'- cAGGCGG--CGG--------------CuuCGGca---GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 147465 0.66 0.546086
Target:  5'- -gCCG-CGCCGcguGAGCCGUCcGCCgggggaCCCa -3'
miRNA:   3'- caGGCgGCGGC---UUCGGCAG-CGGg-----GGG- -5'
5140 3' -64.6 NC_001798.1 + 150463 0.66 0.546086
Target:  5'- -aCgGCCGCgCGggGgCGcgcggCGCgCCCCg -3'
miRNA:   3'- caGgCGGCG-GCuuCgGCa----GCGgGGGG- -5'
5140 3' -64.6 NC_001798.1 + 63453 0.66 0.546086
Target:  5'- --gCGCCGCCucGGGCuuggCGUgGCCCCCg -3'
miRNA:   3'- cagGCGGCGGc-UUCG----GCAgCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 97403 0.66 0.546086
Target:  5'- -gCCGCUGCUGcggcGGCuCGUCaGCCCCg- -3'
miRNA:   3'- caGGCGGCGGCu---UCG-GCAG-CGGGGgg -5'
5140 3' -64.6 NC_001798.1 + 118666 0.66 0.546086
Target:  5'- aUCCGCCGCC--AGCUGgCGCUCgCg -3'
miRNA:   3'- cAGGCGGCGGcuUCGGCaGCGGGgGg -5'
5140 3' -64.6 NC_001798.1 + 71093 0.66 0.546086
Target:  5'- -cCCGCgGUCGgcGUgCG-CGCCCCCg -3'
miRNA:   3'- caGGCGgCGGCuuCG-GCaGCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 150696 0.66 0.546086
Target:  5'- --nCGCgCGCCu--GCgCG-CGCCCCCCg -3'
miRNA:   3'- cagGCG-GCGGcuuCG-GCaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 36632 0.66 0.536777
Target:  5'- -gCgGCgGCCGGgcgggGGCgcgcuuuccccgCGUCGCCCCUCg -3'
miRNA:   3'- caGgCGgCGGCU-----UCG------------GCAGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 38493 0.66 0.536777
Target:  5'- -aUCGCC-CCGGAGUCucCGCCCCaCCc -3'
miRNA:   3'- caGGCGGcGGCUUCGGcaGCGGGG-GG- -5'
5140 3' -64.6 NC_001798.1 + 13684 0.66 0.536777
Target:  5'- -gCCGCCGucCCGAcGCCGgaggucaaaCGCCCCaugCCg -3'
miRNA:   3'- caGGCGGC--GGCUuCGGCa--------GCGGGG---GG- -5'
5140 3' -64.6 NC_001798.1 + 151082 0.66 0.536777
Target:  5'- -aCCcCCGcCCGAcccCCGccCGCCCCCCg -3'
miRNA:   3'- caGGcGGC-GGCUuc-GGCa-GCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 34829 0.66 0.536777
Target:  5'- cUCCGCCgggggcccggGCCGGAccGCCGggcgggggaCGCCUUCCg -3'
miRNA:   3'- cAGGCGG----------CGGCUU--CGGCa--------GCGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.