miRNA display CGI


Results 21 - 40 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 3' -64.6 NC_001798.1 + 19984 0.66 0.555448
Target:  5'- -cCCGCCGgacgcggauuCCGGguucucccggccGGCCGgggaggGCCCCCCc -3'
miRNA:   3'- caGGCGGC----------GGCU------------UCGGCag----CGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 139279 0.66 0.555448
Target:  5'- -cCCaGCCGUCcucgGggGCgcauagcgccgCGUCGCCgCCCCg -3'
miRNA:   3'- caGG-CGGCGG----CuuCG-----------GCAGCGG-GGGG- -5'
5140 3' -64.6 NC_001798.1 + 72995 0.66 0.574303
Target:  5'- -cCCaCgCGaCCGAGGaCG-CGCCCCCCa -3'
miRNA:   3'- caGGcG-GC-GGCUUCgGCaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 86099 0.66 0.574303
Target:  5'- -gCUGCgCGCCGccGCgGaCGCCCgCCg -3'
miRNA:   3'- caGGCG-GCGGCuuCGgCaGCGGGgGG- -5'
5140 3' -64.6 NC_001798.1 + 25468 0.66 0.574303
Target:  5'- -cCCGCCGCCuucGGCCcgcugCGCgCCUCg -3'
miRNA:   3'- caGGCGGCGGcu-UCGGca---GCGgGGGG- -5'
5140 3' -64.6 NC_001798.1 + 29807 0.66 0.574303
Target:  5'- -cCCgGCC-CCGAgcGGCCGcCGCggcagaCCCCCg -3'
miRNA:   3'- caGG-CGGcGGCU--UCGGCaGCG------GGGGG- -5'
5140 3' -64.6 NC_001798.1 + 31864 0.66 0.574303
Target:  5'- --aCGCCGCgGAgggggcggcGGCC--CGCCCCCg -3'
miRNA:   3'- cagGCGGCGgCU---------UCGGcaGCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 81440 0.66 0.574303
Target:  5'- cGUCCGacgaCGCCGGcGGCCccaCGCCCaauCCg -3'
miRNA:   3'- -CAGGCg---GCGGCU-UCGGca-GCGGGg--GG- -5'
5140 3' -64.6 NC_001798.1 + 96981 0.66 0.574303
Target:  5'- -aCCGCgGCgGGcggcggggccagGGCCGgccCGCCgCCCg -3'
miRNA:   3'- caGGCGgCGgCU------------UCGGCa--GCGGgGGG- -5'
5140 3' -64.6 NC_001798.1 + 121713 0.66 0.574303
Target:  5'- -gCCGCCGCgaCGGAGgCGgcgGCCCaCCUg -3'
miRNA:   3'- caGGCGGCG--GCUUCgGCag-CGGG-GGG- -5'
5140 3' -64.6 NC_001798.1 + 5407 0.66 0.574303
Target:  5'- gGUCgCGCCGCCGccGCUc-CGCCCgCg -3'
miRNA:   3'- -CAG-GCGGCGGCuuCGGcaGCGGGgGg -5'
5140 3' -64.6 NC_001798.1 + 85410 0.66 0.571465
Target:  5'- gGUCUGCCGCaccaucGAGCUGUacaagcaggccuacCGCCUCUCg -3'
miRNA:   3'- -CAGGCGGCGgc----UUCGGCA--------------GCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 85962 0.66 0.559205
Target:  5'- -gCCGCCGCCcgcaacggggaguucGAGGCCGcCGCCg--- -3'
miRNA:   3'- caGGCGGCGG---------------CUUCGGCaGCGGgggg -5'
5140 3' -64.6 NC_001798.1 + 63905 0.66 0.559205
Target:  5'- cGUCCGCgGCCGAcaggaaggcaaAcagaaagcgguagaaGCCGagcUCGCCCUCg -3'
miRNA:   3'- -CAGGCGgCGGCU-----------U---------------CGGC---AGCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 102507 0.66 0.563912
Target:  5'- -gCCGgCGCCGggGuguCCGUaggccacCGUCCCCg -3'
miRNA:   3'- caGGCgGCGGCuuC---GGCA-------GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 18304 0.66 0.564855
Target:  5'- -cUCGCCgggaagGCCGggGCCGUguuUGUCUCCg -3'
miRNA:   3'- caGGCGG------CGGCuuCGGCA---GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 28812 0.66 0.564855
Target:  5'- cUCCGCCGCCGcGGGCCcggGCCgUCg -3'
miRNA:   3'- cAGGCGGCGGC-UUCGGcagCGGgGGg -5'
5140 3' -64.6 NC_001798.1 + 30863 0.66 0.564855
Target:  5'- gGUCCG-CGCC----CUGUCGCCCaCCCc -3'
miRNA:   3'- -CAGGCgGCGGcuucGGCAGCGGG-GGG- -5'
5140 3' -64.6 NC_001798.1 + 98646 0.66 0.564855
Target:  5'- -aCCGUCGCggcgaaCGggGgucccgccucCCGgcCGCCCCCCg -3'
miRNA:   3'- caGGCGGCG------GCuuC----------GGCa-GCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 25702 0.66 0.570519
Target:  5'- -aCgGCCGCCuGGGCgGgcaacuggaccggCGCCCCCg -3'
miRNA:   3'- caGgCGGCGGcUUCGgCa------------GCGGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.