miRNA display CGI


Results 41 - 60 of 271 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 3' -64.6 NC_001798.1 + 29807 0.66 0.574303
Target:  5'- -cCCgGCC-CCGAgcGGCCGcCGCggcagaCCCCCg -3'
miRNA:   3'- caGG-CGGcGGCU--UCGGCaGCG------GGGGG- -5'
5140 3' -64.6 NC_001798.1 + 31864 0.66 0.574303
Target:  5'- --aCGCCGCgGAgggggcggcGGCC--CGCCCCCg -3'
miRNA:   3'- cagGCGGCGgCU---------UCGGcaGCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 81440 0.66 0.574303
Target:  5'- cGUCCGacgaCGCCGGcGGCCccaCGCCCaauCCg -3'
miRNA:   3'- -CAGGCg---GCGGCU-UCGGca-GCGGGg--GG- -5'
5140 3' -64.6 NC_001798.1 + 96981 0.66 0.574303
Target:  5'- -aCCGCgGCgGGcggcggggccagGGCCGgccCGCCgCCCg -3'
miRNA:   3'- caGGCGgCGgCU------------UCGGCa--GCGGgGGG- -5'
5140 3' -64.6 NC_001798.1 + 121713 0.66 0.574303
Target:  5'- -gCCGCCGCgaCGGAGgCGgcgGCCCaCCUg -3'
miRNA:   3'- caGGCGGCG--GCUUCgGCag-CGGG-GGG- -5'
5140 3' -64.6 NC_001798.1 + 28812 0.66 0.564855
Target:  5'- cUCCGCCGCCGcGGGCCcggGCCgUCg -3'
miRNA:   3'- cAGGCGGCGGC-UUCGGcagCGGgGGg -5'
5140 3' -64.6 NC_001798.1 + 18304 0.66 0.564855
Target:  5'- -cUCGCCgggaagGCCGggGCCGUguuUGUCUCCg -3'
miRNA:   3'- caGGCGG------CGGCuuCGGCA---GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 150696 0.66 0.546086
Target:  5'- --nCGCgCGCCu--GCgCG-CGCCCCCCg -3'
miRNA:   3'- cagGCG-GCGGcuuCG-GCaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 81916 0.66 0.552634
Target:  5'- uUCCGCCcgGCCccgccucggcucgcGggGCCuuuccCGCCCCCa -3'
miRNA:   3'- cAGGCGG--CGG--------------CuuCGGca---GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 51249 0.66 0.555448
Target:  5'- aGUCCGuUCGCgGAcGCCGggacagCGCCaucacgcgggCCCCg -3'
miRNA:   3'- -CAGGC-GGCGgCUuCGGCa-----GCGG----------GGGG- -5'
5140 3' -64.6 NC_001798.1 + 149254 0.66 0.555448
Target:  5'- -gUCGCCgGCCGgcGCgGgcgCGCCCugcuCCCg -3'
miRNA:   3'- caGGCGG-CGGCuuCGgCa--GCGGG----GGG- -5'
5140 3' -64.6 NC_001798.1 + 24866 0.66 0.555448
Target:  5'- -gCCGCCgugcgcGCCGuGAGCCugGUCGCCggggCCCUg -3'
miRNA:   3'- caGGCGG------CGGC-UUCGG--CAGCGG----GGGG- -5'
5140 3' -64.6 NC_001798.1 + 48357 0.66 0.555448
Target:  5'- -aCCGCgGCCGc--CCGggGCCgCCCCg -3'
miRNA:   3'- caGGCGgCGGCuucGGCagCGG-GGGG- -5'
5140 3' -64.6 NC_001798.1 + 80785 0.66 0.555448
Target:  5'- cUCgCGCC-CCGGcgGGCCGgaCGCCgCCCu -3'
miRNA:   3'- cAG-GCGGcGGCU--UCGGCa-GCGGgGGG- -5'
5140 3' -64.6 NC_001798.1 + 146598 0.66 0.555448
Target:  5'- -gCCGCggCGCCaGcGGCCcaCGCCUCCCg -3'
miRNA:   3'- caGGCG--GCGG-CuUCGGcaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 19984 0.66 0.555448
Target:  5'- -cCCGCCGgacgcggauuCCGGguucucccggccGGCCGgggaggGCCCCCCc -3'
miRNA:   3'- caGGCGGC----------GGCU------------UCGGCag----CGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 139279 0.66 0.555448
Target:  5'- -cCCaGCCGUCcucgGggGCgcauagcgccgCGUCGCCgCCCCg -3'
miRNA:   3'- caGG-CGGCGG----CuuCG-----------GCAGCGG-GGGG- -5'
5140 3' -64.6 NC_001798.1 + 85962 0.66 0.559205
Target:  5'- -gCCGCCGCCcgcaacggggaguucGAGGCCGcCGCCg--- -3'
miRNA:   3'- caGGCGGCGG---------------CUUCGGCaGCGGgggg -5'
5140 3' -64.6 NC_001798.1 + 63905 0.66 0.559205
Target:  5'- cGUCCGCgGCCGAcaggaaggcaaAcagaaagcgguagaaGCCGagcUCGCCCUCg -3'
miRNA:   3'- -CAGGCGgCGGCU-----------U---------------CGGC---AGCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 102507 0.66 0.563912
Target:  5'- -gCCGgCGCCGggGuguCCGUaggccacCGUCCCCg -3'
miRNA:   3'- caGGCgGCGGCuuC---GGCA-------GCGGGGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.