miRNA display CGI


Results 41 - 60 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 3' -64.6 NC_001798.1 + 30863 0.66 0.564855
Target:  5'- gGUCCG-CGCC----CUGUCGCCCaCCCc -3'
miRNA:   3'- -CAGGCgGCGGcuucGGCAGCGGG-GGG- -5'
5140 3' -64.6 NC_001798.1 + 24866 0.66 0.555448
Target:  5'- -gCCGCCgugcgcGCCGuGAGCCugGUCGCCggggCCCUg -3'
miRNA:   3'- caGGCGG------CGGC-UUCGG--CAGCGG----GGGG- -5'
5140 3' -64.6 NC_001798.1 + 48357 0.66 0.555448
Target:  5'- -aCCGCgGCCGc--CCGggGCCgCCCCg -3'
miRNA:   3'- caGGCGgCGGCuucGGCagCGG-GGGG- -5'
5140 3' -64.6 NC_001798.1 + 80785 0.66 0.555448
Target:  5'- cUCgCGCC-CCGGcgGGCCGgaCGCCgCCCu -3'
miRNA:   3'- cAG-GCGGcGGCU--UCGGCa-GCGGgGGG- -5'
5140 3' -64.6 NC_001798.1 + 146598 0.66 0.555448
Target:  5'- -gCCGCggCGCCaGcGGCCcaCGCCUCCCg -3'
miRNA:   3'- caGGCG--GCGG-CuUCGGcaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 19984 0.66 0.555448
Target:  5'- -cCCGCCGgacgcggauuCCGGguucucccggccGGCCGgggaggGCCCCCCc -3'
miRNA:   3'- caGGCGGC----------GGCU------------UCGGCag----CGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 139279 0.66 0.555448
Target:  5'- -cCCaGCCGUCcucgGggGCgcauagcgccgCGUCGCCgCCCCg -3'
miRNA:   3'- caGG-CGGCGG----CuuCG-----------GCAGCGG-GGGG- -5'
5140 3' -64.6 NC_001798.1 + 85962 0.66 0.559205
Target:  5'- -gCCGCCGCCcgcaacggggaguucGAGGCCGcCGCCg--- -3'
miRNA:   3'- caGGCGGCGG---------------CUUCGGCaGCGGgggg -5'
5140 3' -64.6 NC_001798.1 + 63905 0.66 0.559205
Target:  5'- cGUCCGCgGCCGAcaggaaggcaaAcagaaagcgguagaaGCCGagcUCGCCCUCg -3'
miRNA:   3'- -CAGGCGgCGGCU-----------U---------------CGGC---AGCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 102507 0.66 0.563912
Target:  5'- -gCCGgCGCCGggGuguCCGUaggccacCGUCCCCg -3'
miRNA:   3'- caGGCgGCGGCuuC---GGCA-------GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 18304 0.66 0.564855
Target:  5'- -cUCGCCgggaagGCCGggGCCGUguuUGUCUCCg -3'
miRNA:   3'- caGGCGG------CGGCuuCGGCA---GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 28812 0.66 0.564855
Target:  5'- cUCCGCCGCCGcGGGCCcggGCCgUCg -3'
miRNA:   3'- cAGGCGGCGGC-UUCGGcagCGGgGGg -5'
5140 3' -64.6 NC_001798.1 + 55003 0.67 0.509198
Target:  5'- cGUCuUGCCGgCGggGCCGcccUGCCgggagacgCCCCg -3'
miRNA:   3'- -CAG-GCGGCgGCuuCGGCa--GCGG--------GGGG- -5'
5140 3' -64.6 NC_001798.1 + 4715 0.67 0.509198
Target:  5'- cGUCCGCgGCa--GGCuCGUCgacgGCCuCCCCg -3'
miRNA:   3'- -CAGGCGgCGgcuUCG-GCAG----CGG-GGGG- -5'
5140 3' -64.6 NC_001798.1 + 145989 0.67 0.509198
Target:  5'- cUCCGgcagcaCGCCGAccaccGCCGcCaCCCCCCa -3'
miRNA:   3'- cAGGCg-----GCGGCUu----CGGCaGcGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 69070 0.67 0.509198
Target:  5'- -cCCGCgCGCgCGcAGCCGcucUCgGCCCgCCCg -3'
miRNA:   3'- caGGCG-GCG-GCuUCGGC---AG-CGGG-GGG- -5'
5140 3' -64.6 NC_001798.1 + 80207 0.67 0.517412
Target:  5'- aUCCGCguguUGCCGAcguuuuuGGaCgGagGCCCCCCg -3'
miRNA:   3'- cAGGCG----GCGGCU-------UC-GgCagCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 29015 0.67 0.518328
Target:  5'- -gCCGCCGCgCGGGcCCGgacucCGCCCCg- -3'
miRNA:   3'- caGGCGGCG-GCUUcGGCa----GCGGGGgg -5'
5140 3' -64.6 NC_001798.1 + 146485 0.67 0.518328
Target:  5'- cUCCGggGCCGGgccgGGCCGgcaaCGCCCCgCg -3'
miRNA:   3'- cAGGCggCGGCU----UCGGCa---GCGGGGgG- -5'
5140 3' -64.6 NC_001798.1 + 101484 0.67 0.508289
Target:  5'- uUCCGUCGCgugugGggGCCaUCgguucggcuccuaGCCCCCCc -3'
miRNA:   3'- cAGGCGGCGg----CuuCGGcAG-------------CGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.