Results 41 - 60 of 271 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5140 | 3' | -64.6 | NC_001798.1 | + | 25090 | 0.77 | 0.114084 |
Target: 5'- --gCGCCGCCGGGcggcGCCccgCGCCCCCCg -3' miRNA: 3'- cagGCGGCGGCUU----CGGca-GCGGGGGG- -5' |
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5140 | 3' | -64.6 | NC_001798.1 | + | 25153 | 0.79 | 0.080685 |
Target: 5'- -gCCGCCccucccGCgGggGCCG-CGCCCCCCg -3' miRNA: 3'- caGGCGG------CGgCuuCGGCaGCGGGGGG- -5' |
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5140 | 3' | -64.6 | NC_001798.1 | + | 25194 | 0.84 | 0.038761 |
Target: 5'- -gCCGCCGCCGcGGCCGcCGCgCCCCg -3' miRNA: 3'- caGGCGGCGGCuUCGGCaGCGgGGGG- -5' |
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5140 | 3' | -64.6 | NC_001798.1 | + | 25274 | 0.7 | 0.345501 |
Target: 5'- -gCCaGCCGCCGggGCCcagccacacgccggCGCCCUCg -3' miRNA: 3'- caGG-CGGCGGCuuCGGca------------GCGGGGGg -5' |
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5140 | 3' | -64.6 | NC_001798.1 | + | 25312 | 0.74 | 0.184469 |
Target: 5'- -gCCGCCGCCcugGAGGCCuacugCGCCCCgCg -3' miRNA: 3'- caGGCGGCGG---CUUCGGca---GCGGGGgG- -5' |
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5140 | 3' | -64.6 | NC_001798.1 | + | 25432 | 0.73 | 0.202523 |
Target: 5'- -gCCGCgCGCUGc-GCCGcccCGCCCCCCg -3' miRNA: 3'- caGGCG-GCGGCuuCGGCa--GCGGGGGG- -5' |
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5140 | 3' | -64.6 | NC_001798.1 | + | 25468 | 0.66 | 0.574303 |
Target: 5'- -cCCGCCGCCuucGGCCcgcugCGCgCCUCg -3' miRNA: 3'- caGGCGGCGGcu-UCGGca---GCGgGGGG- -5' |
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5140 | 3' | -64.6 | NC_001798.1 | + | 25604 | 0.72 | 0.266052 |
Target: 5'- -gCCG-CGCCGggGgCGg-GCCCCCCc -3' miRNA: 3'- caGGCgGCGGCuuCgGCagCGGGGGG- -5' |
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5140 | 3' | -64.6 | NC_001798.1 | + | 25702 | 0.66 | 0.570519 |
Target: 5'- -aCgGCCGCCuGGGCgGgcaacuggaccggCGCCCCCg -3' miRNA: 3'- caGgCGGCGGcUUCGgCa------------GCGGGGGg -5' |
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5140 | 3' | -64.6 | NC_001798.1 | + | 26186 | 0.68 | 0.455977 |
Target: 5'- -cCCGgCGCUGGacGGCCGggcCGCCgCCUCg -3' miRNA: 3'- caGGCgGCGGCU--UCGGCa--GCGG-GGGG- -5' |
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5140 | 3' | -64.6 | NC_001798.1 | + | 26553 | 0.67 | 0.482233 |
Target: 5'- -aCCGCCG-CGggGCUGgccaCGCCgCCg -3' miRNA: 3'- caGGCGGCgGCuuCGGCa---GCGGgGGg -5' |
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5140 | 3' | -64.6 | NC_001798.1 | + | 27638 | 0.8 | 0.074854 |
Target: 5'- -cCCGCCGCCGccGCCcgccuucgCGCCCCCCc -3' miRNA: 3'- caGGCGGCGGCuuCGGca------GCGGGGGG- -5' |
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5140 | 3' | -64.6 | NC_001798.1 | + | 27725 | 0.68 | 0.422209 |
Target: 5'- aGUCC-CCGUCcu-GCCGcCGCCCCUUa -3' miRNA: 3'- -CAGGcGGCGGcuuCGGCaGCGGGGGG- -5' |
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5140 | 3' | -64.6 | NC_001798.1 | + | 27929 | 0.77 | 0.122761 |
Target: 5'- -cCCGCCGCCGGggucccggcgccGGCCG-CGCCCCg- -3' miRNA: 3'- caGGCGGCGGCU------------UCGGCaGCGGGGgg -5' |
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5140 | 3' | -64.6 | NC_001798.1 | + | 27984 | 0.67 | 0.464645 |
Target: 5'- -cCCGgCGCUccAGCCGUgcCGCgCCCCg -3' miRNA: 3'- caGGCgGCGGcuUCGGCA--GCGgGGGG- -5' |
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5140 | 3' | -64.6 | NC_001798.1 | + | 28220 | 0.7 | 0.330568 |
Target: 5'- -cCCGCaCGCCGcgccuGCCGccgccUGCCCCCCn -3' miRNA: 3'- caGGCG-GCGGCuu---CGGCa----GCGGGGGG- -5' |
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5140 | 3' | -64.6 | NC_001798.1 | + | 28253 | 0.8 | 0.076751 |
Target: 5'- -gCCGCCGCCGcgcaaggagcgcGGGCCGcagCGCCCCCUu -3' miRNA: 3'- caGGCGGCGGC------------UUCGGCa--GCGGGGGG- -5' |
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5140 | 3' | -64.6 | NC_001798.1 | + | 28812 | 0.66 | 0.564855 |
Target: 5'- cUCCGCCGCCGcGGGCCcggGCCgUCg -3' miRNA: 3'- cAGGCGGCGGC-UUCGGcagCGGgGGg -5' |
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5140 | 3' | -64.6 | NC_001798.1 | + | 28959 | 0.67 | 0.473398 |
Target: 5'- -cCCGgCGCCGccccGCCGcucCGCCCgCCCc -3' miRNA: 3'- caGGCgGCGGCuu--CGGCa--GCGGG-GGG- -5' |
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5140 | 3' | -64.6 | NC_001798.1 | + | 29015 | 0.67 | 0.518328 |
Target: 5'- -gCCGCCGCgCGGGcCCGgacucCGCCCCg- -3' miRNA: 3'- caGGCGGCG-GCUUcGGCa----GCGGGGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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