miRNA display CGI


Results 21 - 40 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 3' -64.6 NC_001798.1 + 15829 0.66 0.527522
Target:  5'- --gCGCCGCCcgguucggGggGCCcgaacgucgggGUCGaCCCCCUc -3'
miRNA:   3'- cagGCGGCGG--------CuuCGG-----------CAGC-GGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 16220 0.71 0.308076
Target:  5'- --gCGCCGCCugugggggggcgguGggGCCGggGCCCUCCc -3'
miRNA:   3'- cagGCGGCGG--------------CuuCGGCagCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 17881 0.68 0.422209
Target:  5'- -cCCGCgGCUGAuGGCCcgaagUGCCUCCCg -3'
miRNA:   3'- caGGCGgCGGCU-UCGGca---GCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 18304 0.66 0.564855
Target:  5'- -cUCGCCgggaagGCCGggGCCGUguuUGUCUCCg -3'
miRNA:   3'- caGGCGG------CGGCuuCGGCA---GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 19984 0.66 0.555448
Target:  5'- -cCCGCCGgacgcggauuCCGGguucucccggccGGCCGgggaggGCCCCCCc -3'
miRNA:   3'- caGGCGGC----------GGCU------------UCGGCag----CGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 21466 0.69 0.38999
Target:  5'- cGUCCcCCGCCcguccccccGGCCG--GCCCCCCg -3'
miRNA:   3'- -CAGGcGGCGGcu-------UCGGCagCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 21654 0.72 0.247674
Target:  5'- -cUCGCCGCCGGcgucucugucucGCUGUgGCCCCCUu -3'
miRNA:   3'- caGGCGGCGGCUu-----------CGGCAgCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 21717 0.72 0.243247
Target:  5'- cUCCGCCG-CGcAGCCGgugUGCCCCUg -3'
miRNA:   3'- cAGGCGGCgGCuUCGGCa--GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 22842 0.76 0.128882
Target:  5'- -aCCGCCGCCcaccccGAacccGGaCCGUCGCCCCgCCg -3'
miRNA:   3'- caGGCGGCGG------CU----UC-GGCAGCGGGG-GG- -5'
5140 3' -64.6 NC_001798.1 + 22939 0.76 0.132048
Target:  5'- -gCCGCCGCCGAuGCCGU-GCCgacgaggcggCCCCg -3'
miRNA:   3'- caGGCGGCGGCUuCGGCAgCGG----------GGGG- -5'
5140 3' -64.6 NC_001798.1 + 22998 0.67 0.491147
Target:  5'- -cCUGCCGCgGAcGgCGUCGUCUCgCCg -3'
miRNA:   3'- caGGCGGCGgCUuCgGCAGCGGGG-GG- -5'
5140 3' -64.6 NC_001798.1 + 23061 0.75 0.156281
Target:  5'- -gCCGuUCGCaCGAucCCGUCGCCCCCCc -3'
miRNA:   3'- caGGC-GGCG-GCUucGGCAGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 23338 0.77 0.125787
Target:  5'- -aCCGCCGCCGG---CG-CGCCCCCCg -3'
miRNA:   3'- caGGCGGCGGCUucgGCaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 23804 0.74 0.184469
Target:  5'- -gCCGUgGcCCGggGCCG--GCCCCCCg -3'
miRNA:   3'- caGGCGgC-GGCuuCGGCagCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 24386 0.72 0.266052
Target:  5'- -cCCGCCGCC---GCCGcCGCCCCg- -3'
miRNA:   3'- caGGCGGCGGcuuCGGCaGCGGGGgg -5'
5140 3' -64.6 NC_001798.1 + 24476 0.67 0.464645
Target:  5'- -cUCGCCGCCcuggggcgccuGAGcGCCG-CGCCCgCCu -3'
miRNA:   3'- caGGCGGCGG-----------CUU-CGGCaGCGGGgGG- -5'
5140 3' -64.6 NC_001798.1 + 24739 0.7 0.323627
Target:  5'- -cCCGCCGCac--GCCGacgCGCCCCgCCu -3'
miRNA:   3'- caGGCGGCGgcuuCGGCa--GCGGGG-GG- -5'
5140 3' -64.6 NC_001798.1 + 24866 0.66 0.555448
Target:  5'- -gCCGCCgugcgcGCCGuGAGCCugGUCGCCggggCCCUg -3'
miRNA:   3'- caGGCGG------CGGC-UUCGG--CAGCGG----GGGG- -5'
5140 3' -64.6 NC_001798.1 + 24940 0.7 0.352047
Target:  5'- cUCCGCCGCCGc-GCCGcCGCggaCCUg -3'
miRNA:   3'- cAGGCGGCGGCuuCGGCaGCGg--GGGg -5'
5140 3' -64.6 NC_001798.1 + 25006 0.74 0.180183
Target:  5'- -aCCGUCGCCGcGGCCGacUCGCUCgCCg -3'
miRNA:   3'- caGGCGGCGGCuUCGGC--AGCGGGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.