miRNA display CGI


Results 21 - 40 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 3' -64.6 NC_001798.1 + 147035 0.71 0.296952
Target:  5'- cUUgGCCGCCGAggugcgccccGGCCGgagggGCCCCCg -3'
miRNA:   3'- cAGgCGGCGGCU----------UCGGCag---CGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 146745 0.68 0.438908
Target:  5'- aUCCauuaaGCCGCCGGagAGCCcgaGCCCCgCCc -3'
miRNA:   3'- cAGG-----CGGCGGCU--UCGGcagCGGGG-GG- -5'
5140 3' -64.6 NC_001798.1 + 146598 0.66 0.555448
Target:  5'- -gCCGCggCGCCaGcGGCCcaCGCCUCCCg -3'
miRNA:   3'- caGGCG--GCGG-CuUCGGcaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 146485 0.67 0.518328
Target:  5'- cUCCGggGCCGGgccgGGCCGgcaaCGCCCCgCg -3'
miRNA:   3'- cAGGCggCGGCU----UCGGCa---GCGGGGgG- -5'
5140 3' -64.6 NC_001798.1 + 145989 0.67 0.509198
Target:  5'- cUCCGgcagcaCGCCGAccaccGCCGcCaCCCCCCa -3'
miRNA:   3'- cAGGCg-----GCGGCUu----CGGCaGcGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 145898 0.71 0.304114
Target:  5'- -aCCGCCGCCgcgccccaccggcggGAucgcggcgagacgcAGCCGg-GCCCCCCc -3'
miRNA:   3'- caGGCGGCGG---------------CU--------------UCGGCagCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 145546 0.69 0.382191
Target:  5'- -cCCgGCCGCCcgcgucgcGCCGgCGCCCCCUc -3'
miRNA:   3'- caGG-CGGCGGcuu-----CGGCaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 145508 0.71 0.303457
Target:  5'- -gCCGCCGCgCGcccccgcccGGCCGccgCGCgCCCCCg -3'
miRNA:   3'- caGGCGGCG-GCu--------UCGGCa--GCG-GGGGG- -5'
5140 3' -64.6 NC_001798.1 + 145466 0.71 0.303457
Target:  5'- -gCCGCCGCgCGcccccgcccGGCCGccgCGCgCCCCCg -3'
miRNA:   3'- caGGCGGCG-GCu--------UCGGCa--GCG-GGGGG- -5'
5140 3' -64.6 NC_001798.1 + 145424 0.71 0.303457
Target:  5'- -gCCGCCGCgCGcccccgcccGGCCGccgCGCgCCCCCg -3'
miRNA:   3'- caGGCGGCG-GCu--------UCGGCa--GCG-GGGGG- -5'
5140 3' -64.6 NC_001798.1 + 139279 0.66 0.555448
Target:  5'- -cCCaGCCGUCcucgGggGCgcauagcgccgCGUCGCCgCCCCg -3'
miRNA:   3'- caGG-CGGCGG----CuuCG-----------GCAGCGG-GGGG- -5'
5140 3' -64.6 NC_001798.1 + 138765 0.68 0.433859
Target:  5'- -gCCaGCUGCCGggGCagCGUgugcugccugagaaaCGCCCCCa -3'
miRNA:   3'- caGG-CGGCGGCuuCG--GCA---------------GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 138183 0.68 0.438908
Target:  5'- -cCCGCgGCCGguGCCGcccUUGCCgaaCCCa -3'
miRNA:   3'- caGGCGgCGGCuuCGGC---AGCGGg--GGG- -5'
5140 3' -64.6 NC_001798.1 + 138126 0.69 0.366906
Target:  5'- cGUCUGaaaCGCCuggcGAAGCUgcugcgGUCGCgCCCCCg -3'
miRNA:   3'- -CAGGCg--GCGG----CUUCGG------CAGCG-GGGGG- -5'
5140 3' -64.6 NC_001798.1 + 137951 0.71 0.310071
Target:  5'- gGUCCGCCGCgCGcuGCUcccgcuccagCGCCCCCg -3'
miRNA:   3'- -CAGGCGGCG-GCuuCGGca--------GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 137910 0.73 0.227229
Target:  5'- aUCCGCCuccGCCGGgcGGcCCG-CGCCUCCCc -3'
miRNA:   3'- cAGGCGG---CGGCU--UC-GGCaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 134997 0.66 0.527522
Target:  5'- -cCCGCggugggCGCCaGGGUCGUCcuGCCCCCg -3'
miRNA:   3'- caGGCG------GCGGcUUCGGCAG--CGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 134925 0.66 0.533994
Target:  5'- -gCCGCCGCCGAgucGGCgCGUgaccuggugcggggCGCCgcggccaCCCa -3'
miRNA:   3'- caGGCGGCGGCU---UCG-GCA--------------GCGGg------GGG- -5'
5140 3' -64.6 NC_001798.1 + 134796 0.75 0.160056
Target:  5'- -gCCGCCcCCGGAGCCcUgGCCCCCg -3'
miRNA:   3'- caGGCGGcGGCUUCGGcAgCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 134744 0.74 0.193312
Target:  5'- cUCCGCC-CCGgcGCUgGUCGCCCUCUu -3'
miRNA:   3'- cAGGCGGcGGCuuCGG-CAGCGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.