miRNA display CGI


Results 1 - 20 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 3' -64.6 NC_001798.1 + 154508 0.68 0.437221
Target:  5'- -cCCGCgCGCCGcgGGGCUGccuucccgcgggCGCCCCCg -3'
miRNA:   3'- caGGCG-GCGGC--UUCGGCa-----------GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 154460 0.73 0.217054
Target:  5'- cGUCCcuCCcCCGGAGCCGgcCGCuCCCCCg -3'
miRNA:   3'- -CAGGc-GGcGGCUUCGGCa-GCG-GGGGG- -5'
5140 3' -64.6 NC_001798.1 + 153913 0.72 0.260193
Target:  5'- aGUCCG-CGUCGucGCUGUCGUCCgCCu -3'
miRNA:   3'- -CAGGCgGCGGCuuCGGCAGCGGGgGG- -5'
5140 3' -64.6 NC_001798.1 + 153254 0.76 0.145437
Target:  5'- -cCCGCgCGCCGccGCCGcCGCCUCCUc -3'
miRNA:   3'- caGGCG-GCGGCuuCGGCaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 153180 0.78 0.108355
Target:  5'- cUCCGCCgGCCGAGGCCGcccUCGCCgguucaaCCCUa -3'
miRNA:   3'- cAGGCGG-CGGCUUCGGC---AGCGG-------GGGG- -5'
5140 3' -64.6 NC_001798.1 + 153027 0.71 0.296952
Target:  5'- aGUCCGggcCCGCgCGGcggcgcgcgguuGGCCGgcgcCGCCCCCUg -3'
miRNA:   3'- -CAGGC---GGCG-GCU------------UCGGCa---GCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 152649 0.66 0.535848
Target:  5'- -cCCGCCGgCGcGGCCcugagugGUgccCGCCCCCg -3'
miRNA:   3'- caGGCGGCgGCuUCGG-------CA---GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 152227 0.72 0.243247
Target:  5'- gGUCUGCCGCggcggccgcuCGggGCCGggGUCCgCCCg -3'
miRNA:   3'- -CAGGCGGCG----------GCuuCGGCagCGGG-GGG- -5'
5140 3' -64.6 NC_001798.1 + 151493 0.67 0.491147
Target:  5'- cGUCCG-UGCacacGGCacacaCGUCGCCCCCCc -3'
miRNA:   3'- -CAGGCgGCGgcu-UCG-----GCAGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 151082 0.66 0.536777
Target:  5'- -aCCcCCGcCCGAcccCCGccCGCCCCCCg -3'
miRNA:   3'- caGGcGGC-GGCUuc-GGCa-GCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 150899 0.68 0.422209
Target:  5'- -aCCGCCGCCcccgcGCCGgggCGCUCUUCg -3'
miRNA:   3'- caGGCGGCGGcuu--CGGCa--GCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 150696 0.66 0.546086
Target:  5'- --nCGCgCGCCu--GCgCG-CGCCCCCCg -3'
miRNA:   3'- cagGCG-GCGGcuuCG-GCaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 150669 0.78 0.103404
Target:  5'- cUCCGCCGCCGcGGCgucuUCGCCCaCCCg -3'
miRNA:   3'- cAGGCGGCGGCuUCGgc--AGCGGG-GGG- -5'
5140 3' -64.6 NC_001798.1 + 150463 0.66 0.546086
Target:  5'- -aCgGCCGCgCGggGgCGcgcggCGCgCCCCg -3'
miRNA:   3'- caGgCGGCG-GCuuCgGCa----GCGgGGGG- -5'
5140 3' -64.6 NC_001798.1 + 150149 0.69 0.38999
Target:  5'- aGUCCGacCCGCgccucuucCGGgggcgGGCCGcCGCCCCCUc -3'
miRNA:   3'- -CAGGC--GGCG--------GCU-----UCGGCaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 149254 0.66 0.555448
Target:  5'- -gUCGCCgGCCGgcGCgGgcgCGCCCugcuCCCg -3'
miRNA:   3'- caGGCGG-CGGCuuCGgCa--GCGGG----GGG- -5'
5140 3' -64.6 NC_001798.1 + 149064 0.7 0.344779
Target:  5'- -gUUGCUGuUCGggGCCGUgucCGUCCCCCc -3'
miRNA:   3'- caGGCGGC-GGCuuCGGCA---GCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 147465 0.66 0.546086
Target:  5'- -gCCG-CGCCGcguGAGCCGUCcGCCgggggaCCCa -3'
miRNA:   3'- caGGCgGCGGC---UUCGGCAG-CGGg-----GGG- -5'
5140 3' -64.6 NC_001798.1 + 147427 0.72 0.260193
Target:  5'- -cCCGCCGCCGccGCCcuUUGCCCgcguCCCa -3'
miRNA:   3'- caGGCGGCGGCuuCGGc-AGCGGG----GGG- -5'
5140 3' -64.6 NC_001798.1 + 147161 0.72 0.237806
Target:  5'- gGUCCcggguaGCCGcCCGgcGCCGggcggaaggCGUCCCCCg -3'
miRNA:   3'- -CAGG------CGGC-GGCuuCGGCa--------GCGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.