miRNA display CGI


Results 1 - 20 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 3' -64.6 NC_001798.1 + 122 0.73 0.217054
Target:  5'- cGUCCcuCCcCCGGAGCCGgcCGCuCCCCCg -3'
miRNA:   3'- -CAGGc-GGcGGCUUCGGCa-GCG-GGGGG- -5'
5140 3' -64.6 NC_001798.1 + 170 0.68 0.437221
Target:  5'- -cCCGCgCGCCGcgGGGCUGccuucccgcgggCGCCCCCg -3'
miRNA:   3'- caGGCG-GCGGC--UUCGGCa-----------GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 1191 0.68 0.455977
Target:  5'- -gCCGcCCGCCGcGGCCagcacCGUCCCCg -3'
miRNA:   3'- caGGC-GGCGGCuUCGGca---GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 1356 0.71 0.272017
Target:  5'- cUCCGCCggGCCGccGCgcacggCGUCGCgCCCCa -3'
miRNA:   3'- cAGGCGG--CGGCuuCG------GCAGCGgGGGG- -5'
5140 3' -64.6 NC_001798.1 + 1472 0.71 0.290556
Target:  5'- aGUCCgGCgCGCCGGGcGCCauggcGUCGCCCgcgCCCg -3'
miRNA:   3'- -CAGG-CG-GCGGCUU-CGG-----CAGCGGG---GGG- -5'
5140 3' -64.6 NC_001798.1 + 3061 0.72 0.266052
Target:  5'- -gUCGCCGUCGAAGCCcuccgccagCGCCUCCa -3'
miRNA:   3'- caGGCGGCGGCUUCGGca-------GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 3139 0.71 0.290556
Target:  5'- cUCCGCgCGCCG--GCCGcCGCCaCCaCCg -3'
miRNA:   3'- cAGGCG-GCGGCuuCGGCaGCGG-GG-GG- -5'
5140 3' -64.6 NC_001798.1 + 3172 0.7 0.337619
Target:  5'- -gCCGUCGUCGucGUCGUCGUCgucggCCCCg -3'
miRNA:   3'- caGGCGGCGGCuuCGGCAGCGG-----GGGG- -5'
5140 3' -64.6 NC_001798.1 + 3376 0.73 0.222092
Target:  5'- -gUCGCCGCCGucGUCGgggguUCGCgCCCCg -3'
miRNA:   3'- caGGCGGCGGCuuCGGC-----AGCGgGGGG- -5'
5140 3' -64.6 NC_001798.1 + 3837 0.69 0.38999
Target:  5'- --gCGCCccccagagGCCGGggcGGCUGUCGCCCagCCCg -3'
miRNA:   3'- cagGCGG--------CGGCU---UCGGCAGCGGG--GGG- -5'
5140 3' -64.6 NC_001798.1 + 4138 0.74 0.184469
Target:  5'- -gCCGCCcCCGggGCCcUCGCgggcaCCCCCg -3'
miRNA:   3'- caGGCGGcGGCuuCGGcAGCG-----GGGGG- -5'
5140 3' -64.6 NC_001798.1 + 4530 0.68 0.422209
Target:  5'- -gUCGUCGUCGucGUCGUCGUUCUCCu -3'
miRNA:   3'- caGGCGGCGGCuuCGGCAGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 4715 0.67 0.509198
Target:  5'- cGUCCGCgGCa--GGCuCGUCgacgGCCuCCCCg -3'
miRNA:   3'- -CAGGCGgCGgcuUCG-GCAG----CGG-GGGG- -5'
5140 3' -64.6 NC_001798.1 + 4923 0.71 0.303457
Target:  5'- cUCCGCCGCgGc--CCGgagaCGUCCCCCg -3'
miRNA:   3'- cAGGCGGCGgCuucGGCa---GCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 5013 0.68 0.422209
Target:  5'- uUCCGCUGCUcc-GCCGacaUCGCCUCCg -3'
miRNA:   3'- cAGGCGGCGGcuuCGGC---AGCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 5301 0.68 0.445692
Target:  5'- --aCGCCGCCGcgccccggcucGCCGggguucCGCCCCCa -3'
miRNA:   3'- cagGCGGCGGCuu---------CGGCa-----GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 5407 0.66 0.574303
Target:  5'- gGUCgCGCCGCCGccGCUc-CGCCCgCg -3'
miRNA:   3'- -CAG-GCGGCGGCuuCGGcaGCGGGgGg -5'
5140 3' -64.6 NC_001798.1 + 5573 0.68 0.447397
Target:  5'- -cCCGCCgGCCccaaaGggGCCGgcgaggUCGCCCCg- -3'
miRNA:   3'- caGGCGG-CGG-----CuuCGGC------AGCGGGGgg -5'
5140 3' -64.6 NC_001798.1 + 9532 0.74 0.193312
Target:  5'- -cCCGUCGCCGAGGcCCGgcuuuuaacCGCCCgCCa -3'
miRNA:   3'- caGGCGGCGGCUUC-GGCa--------GCGGGgGG- -5'
5140 3' -64.6 NC_001798.1 + 13684 0.66 0.536777
Target:  5'- -gCCGCCGucCCGAcGCCGgaggucaaaCGCCCCaugCCg -3'
miRNA:   3'- caGGCGGC--GGCUuCGGCa--------GCGGGG---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.