miRNA display CGI


Results 1 - 20 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 3' -64.6 NC_001798.1 + 128318 1.11 0.000426
Target:  5'- cGUCCGCCGCCGAAGCCGUCGCCCCCCg -3'
miRNA:   3'- -CAGGCGGCGGCUUCGGCAGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 25194 0.84 0.038761
Target:  5'- -gCCGCCGCCGcGGCCGcCGCgCCCCg -3'
miRNA:   3'- caGGCGGCGGCuUCGGCaGCGgGGGG- -5'
5140 3' -64.6 NC_001798.1 + 54854 0.81 0.062782
Target:  5'- -gCCGCCGCCGccuGGCCGgccgaaagccaCGCCCCCCc -3'
miRNA:   3'- caGGCGGCGGCu--UCGGCa----------GCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 56579 0.81 0.064383
Target:  5'- cUCCGCCGgCGAGGa-GUCGUCCCCCa -3'
miRNA:   3'- cAGGCGGCgGCUUCggCAGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 81979 0.8 0.071194
Target:  5'- cUCCGcCCGCCGAaggAGCgGUCGUCCCCg -3'
miRNA:   3'- cAGGC-GGCGGCU---UCGgCAGCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 132140 0.8 0.073002
Target:  5'- cUgCGCCGCCgGggGCCGgcgggcggggCGCCCCCCc -3'
miRNA:   3'- cAgGCGGCGG-CuuCGGCa---------GCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 27638 0.8 0.074854
Target:  5'- -cCCGCCGCCGccGCCcgccuucgCGCCCCCCc -3'
miRNA:   3'- caGGCGGCGGCuuCGGca------GCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 28253 0.8 0.076751
Target:  5'- -gCCGCCGCCGcgcaaggagcgcGGGCCGcagCGCCCCCUu -3'
miRNA:   3'- caGGCGGCGGC------------UUCGGCa--GCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 25153 0.79 0.080685
Target:  5'- -gCCGCCccucccGCgGggGCCG-CGCCCCCCg -3'
miRNA:   3'- caGGCGG------CGgCuuCGGCaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 51948 0.78 0.098424
Target:  5'- -gCCGCUGCUcagcgcgggaGggGCCG-CGCCCCCCc -3'
miRNA:   3'- caGGCGGCGG----------CuuCGGCaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 150669 0.78 0.103404
Target:  5'- cUCCGCCGCCGcGGCgucuUCGCCCaCCCg -3'
miRNA:   3'- cAGGCGGCGGCuUCGgc--AGCGGG-GGG- -5'
5140 3' -64.6 NC_001798.1 + 69844 0.78 0.103404
Target:  5'- gGUCCggGCCGCCGucGGCCGcCcCCCCCCa -3'
miRNA:   3'- -CAGG--CGGCGGCu-UCGGCaGcGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 153180 0.78 0.108355
Target:  5'- cUCCGCCgGCCGAGGCCGcccUCGCCgguucaaCCCUa -3'
miRNA:   3'- cAGGCGG-CGGCUUCGGC---AGCGG-------GGGG- -5'
5140 3' -64.6 NC_001798.1 + 25090 0.77 0.114084
Target:  5'- --gCGCCGCCGGGcggcGCCccgCGCCCCCCg -3'
miRNA:   3'- cagGCGGCGGCUU----CGGca-GCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 31945 0.77 0.114084
Target:  5'- cUCCGCCGCCccgcgcucGCCccUCGCCCCCCa -3'
miRNA:   3'- cAGGCGGCGGcuu-----CGGc-AGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 31617 0.77 0.119803
Target:  5'- aGUCCGCC-CCGcgccGCCGcCGCCCCCg -3'
miRNA:   3'- -CAGGCGGcGGCuu--CGGCaGCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 27929 0.77 0.122761
Target:  5'- -cCCGCCGCCGGggucccggcgccGGCCG-CGCCCCg- -3'
miRNA:   3'- caGGCGGCGGCU------------UCGGCaGCGGGGgg -5'
5140 3' -64.6 NC_001798.1 + 39648 0.77 0.122761
Target:  5'- aGUCggCGCCGCCGggGCCGuaUCGaCCCCg -3'
miRNA:   3'- -CAG--GCGGCGGCuuCGGC--AGCgGGGGg -5'
5140 3' -64.6 NC_001798.1 + 23338 0.77 0.125787
Target:  5'- -aCCGCCGCCGG---CG-CGCCCCCCg -3'
miRNA:   3'- caGGCGGCGGCUucgGCaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 22842 0.76 0.128882
Target:  5'- -aCCGCCGCCcaccccGAacccGGaCCGUCGCCCCgCCg -3'
miRNA:   3'- caGGCGGCGG------CU----UC-GGCAGCGGGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.