Results 41 - 60 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5140 | 5' | -54.2 | NC_001798.1 | + | 36518 | 0.69 | 0.858381 |
Target: 5'- -cGGGGgcgcgcgGCGgccGGGCGGgGGCGCGc -3' miRNA: 3'- uaCCCUaaaa---UGC---UCCGCCgCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 36560 | 0.69 | 0.858381 |
Target: 5'- -cGGGGgcgcgcgGCGgccGGGCGGgGGCGCGc -3' miRNA: 3'- uaCCCUaaaa---UGC---UCCGCCgCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 36602 | 0.69 | 0.858381 |
Target: 5'- -cGGGGgcgcgcgGCGgccGGGCGGgGGCGCGc -3' miRNA: 3'- uaCCCUaaaa---UGC---UCCGCCgCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 38284 | 0.7 | 0.807678 |
Target: 5'- cGUGGcAUUcagacagUACGGGGgGGCGACGUg -3' miRNA: 3'- -UACCcUAAa------AUGCUCCgCCGCUGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 42477 | 0.66 | 0.94587 |
Target: 5'- -aGGGAgccgugcacaacgUACGGGGCGGgGAC-CGg -3' miRNA: 3'- uaCCCUaaa----------AUGCUCCGCCgCUGcGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 43830 | 0.66 | 0.945421 |
Target: 5'- -cGGucucgcgUACGucGGCGGCGAUGCGg -3' miRNA: 3'- uaCCcuaaa--AUGCu-CCGCCGCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 48731 | 0.73 | 0.648981 |
Target: 5'- cUGGGGUgauacuuaaaUGCGGGGUGGUGgACGCGa -3' miRNA: 3'- uACCCUAaa--------AUGCUCCGCCGC-UGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 50396 | 0.68 | 0.894875 |
Target: 5'- -gGGGGUaggaugUGCGAccgGGCGGCG-CGCc -3' miRNA: 3'- uaCCCUAaa----AUGCU---CCGCCGCuGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 51160 | 0.69 | 0.856014 |
Target: 5'- -cGGGucccgACGcgcguccgaggcccGGGCGGCGGCGCc -3' miRNA: 3'- uaCCCuaaaaUGC--------------UCCGCCGCUGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 52168 | 0.68 | 0.894875 |
Target: 5'- -cGGGAggccgcgUUUGCGGGGCGcGUccugGACGUg -3' miRNA: 3'- uaCCCUa------AAAUGCUCCGC-CG----CUGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 52341 | 0.66 | 0.953946 |
Target: 5'- -cGGGGUcgUggcggccgagcACGAGGCGcugggcgacaccGCGGCGCGc -3' miRNA: 3'- uaCCCUAaaA-----------UGCUCCGC------------CGCUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 52510 | 0.68 | 0.880962 |
Target: 5'- -aGGGAcg--ACGcGGCGGCcGCGCGc -3' miRNA: 3'- uaCCCUaaaaUGCuCCGCCGcUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 55891 | 0.69 | 0.849612 |
Target: 5'- -aGGGGg--UACGAGaaccaacGCGGCGACGa- -3' miRNA: 3'- uaCCCUaaaAUGCUC-------CGCCGCUGCgu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 56141 | 0.7 | 0.779979 |
Target: 5'- gGUGGGAaaa-GCGAGuGCGGCGGCu-- -3' miRNA: 3'- -UACCCUaaaaUGCUC-CGCCGCUGcgu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 59148 | 0.68 | 0.871422 |
Target: 5'- gAUGGcacccacgcagGCGAGGCGGgGGCGCc -3' miRNA: 3'- -UACCcuaaaa-----UGCUCCGCCgCUGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 60862 | 0.68 | 0.880962 |
Target: 5'- -cGGGAUc--GCGuccuccgaagggGGGCGGCGGcCGCAc -3' miRNA: 3'- uaCCCUAaaaUGC------------UCCGCCGCU-GCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 64723 | 0.67 | 0.925431 |
Target: 5'- cUGGGc-----CGAGGCGGCGgugggcaugaGCGCGa -3' miRNA: 3'- uACCCuaaaauGCUCCGCCGC----------UGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 67710 | 0.68 | 0.871422 |
Target: 5'- cGUGGGAg---GCGGGGUgGGCgguacgaccgaaagGACGCAc -3' miRNA: 3'- -UACCCUaaaaUGCUCCG-CCG--------------CUGCGU- -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 68806 | 0.71 | 0.710979 |
Target: 5'- cUGGGGUccgcUGCaGAcGGCGGUGACGCu -3' miRNA: 3'- uACCCUAaa--AUG-CU-CCGCCGCUGCGu -5' |
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5140 | 5' | -54.2 | NC_001798.1 | + | 69005 | 0.66 | 0.945421 |
Target: 5'- -cGGcGGcgUcGCGcgcaucguAGGCGGCGGCGCAc -3' miRNA: 3'- uaCC-CUaaAaUGC--------UCCGCCGCUGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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