miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 5' -54.2 NC_001798.1 + 22280 0.66 0.930801
Target:  5'- aAUGaGAUgccgcgcggGCGGagcGGCGGCGGCGCGa -3'
miRNA:   3'- -UACcCUAaaa------UGCU---CCGCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 23558 0.66 0.930801
Target:  5'- -gGGGGUgcccGCGAGGgccccgggGGCGGCGCc -3'
miRNA:   3'- uaCCCUAaaa-UGCUCCg-------CCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 23879 0.72 0.69049
Target:  5'- cUGGGGggcgccCGAGGCGGaggaGGCGCGg -3'
miRNA:   3'- uACCCUaaaau-GCUCCGCCg---CUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 24319 0.72 0.701789
Target:  5'- -cGGGGcgcgaacccccgACGAcGGCGGCGACGCc -3'
miRNA:   3'- uaCCCUaaaa--------UGCU-CCGCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 26507 0.67 0.909693
Target:  5'- -gGGGAcggugcuggccgcgGCG-GGCGGCGGCGUg -3'
miRNA:   3'- uaCCCUaaaa----------UGCuCCGCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 27209 0.68 0.888036
Target:  5'- -gGGGAagccccCGGGGCGG-GGCGCGg -3'
miRNA:   3'- uaCCCUaaaau-GCUCCGCCgCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 27552 0.66 0.949804
Target:  5'- -cGGGGgga---GGGGCGGCGccCGCGg -3'
miRNA:   3'- uaCCCUaaaaugCUCCGCCGCu-GCGU- -5'
5140 5' -54.2 NC_001798.1 + 27593 0.66 0.949804
Target:  5'- -gGGGAggg-ACGGGGaaGGgGGCGCGc -3'
miRNA:   3'- uaCCCUaaaaUGCUCCg-CCgCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 28779 0.73 0.607244
Target:  5'- -gGaGGAggagGCGGcGGCGGCGGCGCGc -3'
miRNA:   3'- uaC-CCUaaaaUGCU-CCGCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 29422 0.68 0.880242
Target:  5'- -gGGGAcucccaucugcgucgGCGGGG-GGCGGCGCAu -3'
miRNA:   3'- uaCCCUaaaa-----------UGCUCCgCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 30532 0.66 0.935921
Target:  5'- -cGGGAg-----GGGGgGGCGACGUg -3'
miRNA:   3'- uaCCCUaaaaugCUCCgCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 31367 0.66 0.940794
Target:  5'- gGUGGGcgaagACGccGCGGCGGCGgAg -3'
miRNA:   3'- -UACCCuaaaaUGCucCGCCGCUGCgU- -5'
5140 5' -54.2 NC_001798.1 + 31981 0.68 0.873658
Target:  5'- gGUGGGGgccaa-GAgGGCGGCGcCGCGc -3'
miRNA:   3'- -UACCCUaaaaugCU-CCGCCGCuGCGU- -5'
5140 5' -54.2 NC_001798.1 + 32955 0.66 0.930801
Target:  5'- gGUGGGAg--UGgGGGGgGGgGACGg- -3'
miRNA:   3'- -UACCCUaaaAUgCUCCgCCgCUGCgu -5'
5140 5' -54.2 NC_001798.1 + 34078 0.7 0.807678
Target:  5'- uUGGGGUUgUugGGGGgGGgugacCGGCGCGu -3'
miRNA:   3'- uACCCUAAaAugCUCCgCC-----GCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 34604 0.69 0.816591
Target:  5'- gGUGGGAcgcggGCaaaGGGCGGCGGCgGCGg -3'
miRNA:   3'- -UACCCUaaaa-UGc--UCCGCCGCUG-CGU- -5'
5140 5' -54.2 NC_001798.1 + 36040 0.67 0.907834
Target:  5'- -gGGGGUg--GCGGcGGUGGuCGGCGUg -3'
miRNA:   3'- uaCCCUAaaaUGCU-CCGCC-GCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 36293 0.67 0.919813
Target:  5'- -gGGGGUgccgUGgGuguGGCGGCGGgGCGc -3'
miRNA:   3'- uaCCCUAaa--AUgCu--CCGCCGCUgCGU- -5'
5140 5' -54.2 NC_001798.1 + 36405 0.68 0.866892
Target:  5'- -cGGGGccccccugccggGCGGGGCGGUGGgGCGg -3'
miRNA:   3'- uaCCCUaaaa--------UGCUCCGCCGCUgCGU- -5'
5140 5' -54.2 NC_001798.1 + 36483 0.66 0.949804
Target:  5'- -cGGGAggggGCGccGGC-GCGACGCGg -3'
miRNA:   3'- uaCCCUaaaaUGCu-CCGcCGCUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.