miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 5' -54.2 NC_001798.1 + 38284 0.7 0.807678
Target:  5'- cGUGGcAUUcagacagUACGGGGgGGCGACGUg -3'
miRNA:   3'- -UACCcUAAa------AUGCUCCgCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 34078 0.7 0.807678
Target:  5'- uUGGGGUUgUugGGGGgGGgugacCGGCGCGu -3'
miRNA:   3'- uACCCUAAaAugCUCCgCC-----GCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 86144 0.69 0.815708
Target:  5'- cUGGGAagcgcaccGCGGGGCGcgcaugcGCGACGCGg -3'
miRNA:   3'- uACCCUaaaa----UGCUCCGC-------CGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 34604 0.69 0.816591
Target:  5'- gGUGGGAcgcggGCaaaGGGCGGCGGCgGCGg -3'
miRNA:   3'- -UACCCUaaaa-UGc--UCCGCCGCUG-CGU- -5'
5140 5' -54.2 NC_001798.1 + 1859 0.69 0.825331
Target:  5'- -cGGcGUUgacgacgAUGAGGCGGCGGuCGCAg -3'
miRNA:   3'- uaCCcUAAaa-----UGCUCCGCCGCU-GCGU- -5'
5140 5' -54.2 NC_001798.1 + 2506 0.69 0.833887
Target:  5'- -cGGGGcgcgGCGGccgcGGCGGCGGCGUc -3'
miRNA:   3'- uaCCCUaaaaUGCU----CCGCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 2606 0.69 0.841425
Target:  5'- -cGGGGggc-GCGGGGCgccgcccGGCGGCGCc -3'
miRNA:   3'- uaCCCUaaaaUGCUCCG-------CCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 20364 0.69 0.842253
Target:  5'- -cGGGcggguuCGGGGCGGC-ACGCAg -3'
miRNA:   3'- uaCCCuaaaauGCUCCGCCGcUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 142481 0.69 0.849612
Target:  5'- -cGGGAcggccccCGAGGCGGCGcgggggugcgauaACGCAc -3'
miRNA:   3'- uaCCCUaaaau--GCUCCGCCGC-------------UGCGU- -5'
5140 5' -54.2 NC_001798.1 + 55891 0.69 0.849612
Target:  5'- -aGGGGg--UACGAGaaccaacGCGGCGACGa- -3'
miRNA:   3'- uaCCCUaaaAUGCUC-------CGCCGCUGCgu -5'
5140 5' -54.2 NC_001798.1 + 12256 0.69 0.85042
Target:  5'- cGUGGGGccgcggACGAccaGGcCGGUGGCGCAg -3'
miRNA:   3'- -UACCCUaaaa--UGCU---CC-GCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 51160 0.69 0.856014
Target:  5'- -cGGGucccgACGcgcguccgaggcccGGGCGGCGGCGCc -3'
miRNA:   3'- uaCCCuaaaaUGC--------------UCCGCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 36560 0.69 0.858381
Target:  5'- -cGGGGgcgcgcgGCGgccGGGCGGgGGCGCGc -3'
miRNA:   3'- uaCCCUaaaa---UGC---UCCGCCgCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 36602 0.69 0.858381
Target:  5'- -cGGGGgcgcgcgGCGgccGGGCGGgGGCGCGc -3'
miRNA:   3'- uaCCCUaaaa---UGC---UCCGCCgCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 146082 0.69 0.858381
Target:  5'- -aGGGGUccgggGCGAGGCGgGCGG-GCGa -3'
miRNA:   3'- uaCCCUAaaa--UGCUCCGC-CGCUgCGU- -5'
5140 5' -54.2 NC_001798.1 + 36518 0.69 0.858381
Target:  5'- -cGGGGgcgcgcgGCGgccGGGCGGgGGCGCGc -3'
miRNA:   3'- uaCCCUaaaa---UGC---UCCGCCgCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 19774 0.68 0.866129
Target:  5'- -aGGGAUagggGC-AGGCGGCGgggaaGCGCAu -3'
miRNA:   3'- uaCCCUAaaa-UGcUCCGCCGC-----UGCGU- -5'
5140 5' -54.2 NC_001798.1 + 36405 0.68 0.866892
Target:  5'- -cGGGGccccccugccggGCGGGGCGGUGGgGCGg -3'
miRNA:   3'- uaCCCUaaaa--------UGCUCCGCCGCUgCGU- -5'
5140 5' -54.2 NC_001798.1 + 67710 0.68 0.871422
Target:  5'- cGUGGGAg---GCGGGGUgGGCgguacgaccgaaagGACGCAc -3'
miRNA:   3'- -UACCCUaaaaUGCUCCG-CCG--------------CUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 59148 0.68 0.871422
Target:  5'- gAUGGcacccacgcagGCGAGGCGGgGGCGCc -3'
miRNA:   3'- -UACCcuaaaa-----UGCUCCGCCgCUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.