miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 5' -54.2 NC_001798.1 + 112494 0.73 0.61767
Target:  5'- gGUGGGAgcaaggGCu-GGCGGUGGCGCGa -3'
miRNA:   3'- -UACCCUaaaa--UGcuCCGCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 105691 0.66 0.953946
Target:  5'- -aGGGAgag-GCGAcagacGGgGGCGACaGCGg -3'
miRNA:   3'- uaCCCUaaaaUGCU-----CCgCCGCUG-CGU- -5'
5140 5' -54.2 NC_001798.1 + 101982 0.68 0.873658
Target:  5'- -cGGGGgg--GCGAuGuGCGGCGGCgGCAg -3'
miRNA:   3'- uaCCCUaaaaUGCU-C-CGCCGCUG-CGU- -5'
5140 5' -54.2 NC_001798.1 + 101843 0.66 0.930801
Target:  5'- -gGGGAg---GCGugggucccGGCGGCGGCGgAg -3'
miRNA:   3'- uaCCCUaaaaUGCu-------CCGCCGCUGCgU- -5'
5140 5' -54.2 NC_001798.1 + 96697 0.67 0.913947
Target:  5'- -cGGGAgUUUAUGGuGGCGGCGGUGgGg -3'
miRNA:   3'- uaCCCUaAAAUGCU-CCGCCGCUGCgU- -5'
5140 5' -54.2 NC_001798.1 + 95374 0.73 0.628106
Target:  5'- uUGcGGAgg--GCGGGGCGGCGGuCGCc -3'
miRNA:   3'- uAC-CCUaaaaUGCUCCGCCGCU-GCGu -5'
5140 5' -54.2 NC_001798.1 + 93078 0.66 0.952318
Target:  5'- -aGGGuaagccccaGCGGGGCGcgcGCGACGCc -3'
miRNA:   3'- uaCCCuaaaa----UGCUCCGC---CGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 88325 0.67 0.907834
Target:  5'- gAUGGGcgUcUACGAGGaCGGCcccgaACGCc -3'
miRNA:   3'- -UACCCuaAaAUGCUCC-GCCGc----UGCGu -5'
5140 5' -54.2 NC_001798.1 + 88055 0.7 0.779033
Target:  5'- cUGGGGgg--GCGggcucguccccugGGGCGGCGGCGUc -3'
miRNA:   3'- uACCCUaaaaUGC-------------UCCGCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 86144 0.69 0.815708
Target:  5'- cUGGGAagcgcaccGCGGGGCGcgcaugcGCGACGCGg -3'
miRNA:   3'- uACCCUaaaa----UGCUCCGC-------CGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 83967 0.66 0.944969
Target:  5'- -cGGcGAcgg-GCGAGGgccugcuCGGCGGCGCGa -3'
miRNA:   3'- uaCC-CUaaaaUGCUCC-------GCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 83867 0.66 0.949804
Target:  5'- -cGGGcc----CGAGGCGGCGACc-- -3'
miRNA:   3'- uaCCCuaaaauGCUCCGCCGCUGcgu -5'
5140 5' -54.2 NC_001798.1 + 79949 0.66 0.949804
Target:  5'- cUGGGcugg-GCGuccGGaGCGGCGGCGCc -3'
miRNA:   3'- uACCCuaaaaUGC---UC-CGCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 74099 0.66 0.930801
Target:  5'- -gGGGAgcccacgGCGGGGCuGCuggaGACGCAa -3'
miRNA:   3'- uaCCCUaaaa---UGCUCCGcCG----CUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 72503 0.68 0.88168
Target:  5'- cUGGGGcccuggcgcccCGAGGCcaugGGCGACGCGg -3'
miRNA:   3'- uACCCUaaaau------GCUCCG----CCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 71395 0.72 0.680165
Target:  5'- -aGGGGUUUUugGuGGCGGgGgugcccGCGCGg -3'
miRNA:   3'- uaCCCUAAAAugCuCCGCCgC------UGCGU- -5'
5140 5' -54.2 NC_001798.1 + 69005 0.66 0.945421
Target:  5'- -cGGcGGcgUcGCGcgcaucguAGGCGGCGGCGCAc -3'
miRNA:   3'- uaCC-CUaaAaUGC--------UCCGCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 68806 0.71 0.710979
Target:  5'- cUGGGGUccgcUGCaGAcGGCGGUGACGCu -3'
miRNA:   3'- uACCCUAaa--AUG-CU-CCGCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 67710 0.68 0.871422
Target:  5'- cGUGGGAg---GCGGGGUgGGCgguacgaccgaaagGACGCAc -3'
miRNA:   3'- -UACCCUaaaaUGCUCCG-CCG--------------CUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 64723 0.67 0.925431
Target:  5'- cUGGGc-----CGAGGCGGCGgugggcaugaGCGCGa -3'
miRNA:   3'- uACCCuaaaauGCUCCGCCGC----------UGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.