miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 5' -54.2 NC_001798.1 + 154390 0.7 0.779033
Target:  5'- uUGGGGggggGCGcgaaggcGGGCGGCGGCgGCGg -3'
miRNA:   3'- uACCCUaaaaUGC-------UCCGCCGCUG-CGU- -5'
5140 5' -54.2 NC_001798.1 + 153809 0.66 0.935921
Target:  5'- -cGGGGg---GC-AGGCGGCGgcagGCGCGg -3'
miRNA:   3'- uaCCCUaaaaUGcUCCGCCGC----UGCGU- -5'
5140 5' -54.2 NC_001798.1 + 153071 0.67 0.925431
Target:  5'- cUGGGGcgg-GCGGaGCGGCGGgGCGg -3'
miRNA:   3'- uACCCUaaaaUGCUcCGCCGCUgCGU- -5'
5140 5' -54.2 NC_001798.1 + 152044 0.67 0.919813
Target:  5'- -aGGGu-----CGGGG-GGCGGCGCAc -3'
miRNA:   3'- uaCCCuaaaauGCUCCgCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 150927 0.66 0.953946
Target:  5'- -cGGGGg---GCG-GGCGG-GACGUAg -3'
miRNA:   3'- uaCCCUaaaaUGCuCCGCCgCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 150569 0.67 0.907834
Target:  5'- -cGGGGccc-GCGGGGCGGCG-CGgAg -3'
miRNA:   3'- uaCCCUaaaaUGCUCCGCCGCuGCgU- -5'
5140 5' -54.2 NC_001798.1 + 150419 0.67 0.925431
Target:  5'- -cGGGGgc------GGCGGCGGCGCGg -3'
miRNA:   3'- uaCCCUaaaaugcuCCGCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 150084 0.72 0.700764
Target:  5'- cUGGGGg---GCGAGG-GGCGAgCGCGg -3'
miRNA:   3'- uACCCUaaaaUGCUCCgCCGCU-GCGU- -5'
5140 5' -54.2 NC_001798.1 + 149928 0.67 0.919813
Target:  5'- -gGaGGAgg--AgGAGGCGGCGGCGa- -3'
miRNA:   3'- uaC-CCUaaaaUgCUCCGCCGCUGCgu -5'
5140 5' -54.2 NC_001798.1 + 146117 0.67 0.901476
Target:  5'- -gGGGGUggugGCGGcGGCGGUGGaaaGCGg -3'
miRNA:   3'- uaCCCUAaaa-UGCU-CCGCCGCUg--CGU- -5'
5140 5' -54.2 NC_001798.1 + 146082 0.69 0.858381
Target:  5'- -aGGGGUccgggGCGAGGCGgGCGG-GCGa -3'
miRNA:   3'- uaCCCUAaaa--UGCUCCGC-CGCUgCGU- -5'
5140 5' -54.2 NC_001798.1 + 145380 0.73 0.638546
Target:  5'- uUGGGAacc--CGAGG-GGCGACGCGg -3'
miRNA:   3'- uACCCUaaaauGCUCCgCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 144310 0.67 0.927609
Target:  5'- -aGGGGcacggaagucgGCaGGGGCGGCGuCGCAu -3'
miRNA:   3'- uaCCCUaaaa-------UG-CUCCGCCGCuGCGU- -5'
5140 5' -54.2 NC_001798.1 + 142481 0.69 0.849612
Target:  5'- -cGGGAcggccccCGAGGCGGCGcgggggugcgauaACGCAc -3'
miRNA:   3'- uaCCCUaaaau--GCUCCGCCGC-------------UGCGU- -5'
5140 5' -54.2 NC_001798.1 + 135697 0.66 0.935921
Target:  5'- -aGGGAUUUccucuccGCGGGGCcGCGuACGCc -3'
miRNA:   3'- uaCCCUAAAa------UGCUCCGcCGC-UGCGu -5'
5140 5' -54.2 NC_001798.1 + 128352 1.07 0.005478
Target:  5'- uAUGGGAUUUUACGAGGCGGCGACGCAa -3'
miRNA:   3'- -UACCCUAAAAUGCUCCGCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 124077 0.66 0.930801
Target:  5'- -cGGGAg-----GAGGCGGCGccuGCGCc -3'
miRNA:   3'- uaCCCUaaaaugCUCCGCCGC---UGCGu -5'
5140 5' -54.2 NC_001798.1 + 116331 0.67 0.919813
Target:  5'- -cGGGGgggcACGAGcccgucuacGCGGCGGCGUg -3'
miRNA:   3'- uaCCCUaaaaUGCUC---------CGCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 113479 0.66 0.930275
Target:  5'- -gGGGGUUgUGCGugaucauGGGCGGCGcggcccuguGCGCc -3'
miRNA:   3'- uaCCCUAAaAUGC-------UCCGCCGC---------UGCGu -5'
5140 5' -54.2 NC_001798.1 + 113339 0.68 0.88664
Target:  5'- -cGGGuggaccggACG-GGCGGUGGCGCc -3'
miRNA:   3'- uaCCCuaaaa---UGCuCCGCCGCUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.