miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 5' -54.2 NC_001798.1 + 36518 0.69 0.858381
Target:  5'- -cGGGGgcgcgcgGCGgccGGGCGGgGGCGCGc -3'
miRNA:   3'- uaCCCUaaaa---UGC---UCCGCCgCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 36560 0.69 0.858381
Target:  5'- -cGGGGgcgcgcgGCGgccGGGCGGgGGCGCGc -3'
miRNA:   3'- uaCCCUaaaa---UGC---UCCGCCgCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 36602 0.69 0.858381
Target:  5'- -cGGGGgcgcgcgGCGgccGGGCGGgGGCGCGc -3'
miRNA:   3'- uaCCCUaaaa---UGC---UCCGCCgCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 38284 0.7 0.807678
Target:  5'- cGUGGcAUUcagacagUACGGGGgGGCGACGUg -3'
miRNA:   3'- -UACCcUAAa------AUGCUCCgCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 42477 0.66 0.94587
Target:  5'- -aGGGAgccgugcacaacgUACGGGGCGGgGAC-CGg -3'
miRNA:   3'- uaCCCUaaa----------AUGCUCCGCCgCUGcGU- -5'
5140 5' -54.2 NC_001798.1 + 43830 0.66 0.945421
Target:  5'- -cGGucucgcgUACGucGGCGGCGAUGCGg -3'
miRNA:   3'- uaCCcuaaa--AUGCu-CCGCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 48731 0.73 0.648981
Target:  5'- cUGGGGUgauacuuaaaUGCGGGGUGGUGgACGCGa -3'
miRNA:   3'- uACCCUAaa--------AUGCUCCGCCGC-UGCGU- -5'
5140 5' -54.2 NC_001798.1 + 50396 0.68 0.894875
Target:  5'- -gGGGGUaggaugUGCGAccgGGCGGCG-CGCc -3'
miRNA:   3'- uaCCCUAaa----AUGCU---CCGCCGCuGCGu -5'
5140 5' -54.2 NC_001798.1 + 51160 0.69 0.856014
Target:  5'- -cGGGucccgACGcgcguccgaggcccGGGCGGCGGCGCc -3'
miRNA:   3'- uaCCCuaaaaUGC--------------UCCGCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 52168 0.68 0.894875
Target:  5'- -cGGGAggccgcgUUUGCGGGGCGcGUccugGACGUg -3'
miRNA:   3'- uaCCCUa------AAAUGCUCCGC-CG----CUGCGu -5'
5140 5' -54.2 NC_001798.1 + 52341 0.66 0.953946
Target:  5'- -cGGGGUcgUggcggccgagcACGAGGCGcugggcgacaccGCGGCGCGc -3'
miRNA:   3'- uaCCCUAaaA-----------UGCUCCGC------------CGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 52510 0.68 0.880962
Target:  5'- -aGGGAcg--ACGcGGCGGCcGCGCGc -3'
miRNA:   3'- uaCCCUaaaaUGCuCCGCCGcUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 55891 0.69 0.849612
Target:  5'- -aGGGGg--UACGAGaaccaacGCGGCGACGa- -3'
miRNA:   3'- uaCCCUaaaAUGCUC-------CGCCGCUGCgu -5'
5140 5' -54.2 NC_001798.1 + 56141 0.7 0.779979
Target:  5'- gGUGGGAaaa-GCGAGuGCGGCGGCu-- -3'
miRNA:   3'- -UACCCUaaaaUGCUC-CGCCGCUGcgu -5'
5140 5' -54.2 NC_001798.1 + 59148 0.68 0.871422
Target:  5'- gAUGGcacccacgcagGCGAGGCGGgGGCGCc -3'
miRNA:   3'- -UACCcuaaaa-----UGCUCCGCCgCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 60862 0.68 0.880962
Target:  5'- -cGGGAUc--GCGuccuccgaagggGGGCGGCGGcCGCAc -3'
miRNA:   3'- uaCCCUAaaaUGC------------UCCGCCGCU-GCGU- -5'
5140 5' -54.2 NC_001798.1 + 64723 0.67 0.925431
Target:  5'- cUGGGc-----CGAGGCGGCGgugggcaugaGCGCGa -3'
miRNA:   3'- uACCCuaaaauGCUCCGCCGC----------UGCGU- -5'
5140 5' -54.2 NC_001798.1 + 67710 0.68 0.871422
Target:  5'- cGUGGGAg---GCGGGGUgGGCgguacgaccgaaagGACGCAc -3'
miRNA:   3'- -UACCCUaaaaUGCUCCG-CCG--------------CUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 68806 0.71 0.710979
Target:  5'- cUGGGGUccgcUGCaGAcGGCGGUGACGCu -3'
miRNA:   3'- uACCCUAaa--AUG-CU-CCGCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 69005 0.66 0.945421
Target:  5'- -cGGcGGcgUcGCGcgcaucguAGGCGGCGGCGCAc -3'
miRNA:   3'- uaCC-CUaaAaUGC--------UCCGCCGCUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.