miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 5' -54.2 NC_001798.1 + 88325 0.67 0.907834
Target:  5'- gAUGGGcgUcUACGAGGaCGGCcccgaACGCc -3'
miRNA:   3'- -UACCCuaAaAUGCUCC-GCCGc----UGCGu -5'
5140 5' -54.2 NC_001798.1 + 146117 0.67 0.901476
Target:  5'- -gGGGGUggugGCGGcGGCGGUGGaaaGCGg -3'
miRNA:   3'- uaCCCUAaaa-UGCU-CCGCCGCUg--CGU- -5'
5140 5' -54.2 NC_001798.1 + 52168 0.68 0.894875
Target:  5'- -cGGGAggccgcgUUUGCGGGGCGcGUccugGACGUg -3'
miRNA:   3'- uaCCCUa------AAAUGCUCCGC-CG----CUGCGu -5'
5140 5' -54.2 NC_001798.1 + 15281 0.68 0.894875
Target:  5'- -cGGGuuccggGCGuGGCGGUGGuCGCGg -3'
miRNA:   3'- uaCCCuaaaa-UGCuCCGCCGCU-GCGU- -5'
5140 5' -54.2 NC_001798.1 + 50396 0.68 0.894875
Target:  5'- -gGGGGUaggaugUGCGAccgGGCGGCG-CGCc -3'
miRNA:   3'- uaCCCUAaa----AUGCU---CCGCCGCuGCGu -5'
5140 5' -54.2 NC_001798.1 + 14320 0.68 0.888036
Target:  5'- -gGGGGUgcgugGgGAGGCGuGCGGuCGCGu -3'
miRNA:   3'- uaCCCUAaaa--UgCUCCGC-CGCU-GCGU- -5'
5140 5' -54.2 NC_001798.1 + 27209 0.68 0.888036
Target:  5'- -gGGGAagccccCGGGGCGG-GGCGCGg -3'
miRNA:   3'- uaCCCUaaaau-GCUCCGCCgCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 113339 0.68 0.88664
Target:  5'- -cGGGuggaccggACG-GGCGGUGGCGCc -3'
miRNA:   3'- uaCCCuaaaa---UGCuCCGCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 12339 0.68 0.88664
Target:  5'- -cGGGAUcggacggguCGAGGUGGCugugGGCGCGg -3'
miRNA:   3'- uaCCCUAaaau-----GCUCCGCCG----CUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 72503 0.68 0.88168
Target:  5'- cUGGGGcccuggcgcccCGAGGCcaugGGCGACGCGg -3'
miRNA:   3'- uACCCUaaaau------GCUCCG----CCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 60862 0.68 0.880962
Target:  5'- -cGGGAUc--GCGuccuccgaagggGGGCGGCGGcCGCAc -3'
miRNA:   3'- uaCCCUAaaaUGC------------UCCGCCGCU-GCGU- -5'
5140 5' -54.2 NC_001798.1 + 52510 0.68 0.880962
Target:  5'- -aGGGAcg--ACGcGGCGGCcGCGCGc -3'
miRNA:   3'- uaCCCUaaaaUGCuCCGCCGcUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 29422 0.68 0.880242
Target:  5'- -gGGGAcucccaucugcgucgGCGGGG-GGCGGCGCAu -3'
miRNA:   3'- uaCCCUaaaa-----------UGCUCCgCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 12710 0.68 0.873658
Target:  5'- cUGGGGgcg-GCgGGGGCGugguGCGGCGCGa -3'
miRNA:   3'- uACCCUaaaaUG-CUCCGC----CGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 31981 0.68 0.873658
Target:  5'- gGUGGGGgccaa-GAgGGCGGCGcCGCGc -3'
miRNA:   3'- -UACCCUaaaaugCU-CCGCCGCuGCGU- -5'
5140 5' -54.2 NC_001798.1 + 101982 0.68 0.873658
Target:  5'- -cGGGGgg--GCGAuGuGCGGCGGCgGCAg -3'
miRNA:   3'- uaCCCUaaaaUGCU-C-CGCCGCUG-CGU- -5'
5140 5' -54.2 NC_001798.1 + 67710 0.68 0.871422
Target:  5'- cGUGGGAg---GCGGGGUgGGCgguacgaccgaaagGACGCAc -3'
miRNA:   3'- -UACCCUaaaaUGCUCCG-CCG--------------CUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 59148 0.68 0.871422
Target:  5'- gAUGGcacccacgcagGCGAGGCGGgGGCGCc -3'
miRNA:   3'- -UACCcuaaaa-----UGCUCCGCCgCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 36405 0.68 0.866892
Target:  5'- -cGGGGccccccugccggGCGGGGCGGUGGgGCGg -3'
miRNA:   3'- uaCCCUaaaa--------UGCUCCGCCGCUgCGU- -5'
5140 5' -54.2 NC_001798.1 + 19774 0.68 0.866129
Target:  5'- -aGGGAUagggGC-AGGCGGCGgggaaGCGCAu -3'
miRNA:   3'- uaCCCUAaaa-UGcUCCGCCGC-----UGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.