miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5141 3' -56.9 NC_001798.1 + 88667 0.67 0.801122
Target:  5'- uGGCCAccAgGCCCGCGGCCgugaGGCc---- -3'
miRNA:   3'- -CUGGU--UgUGGGUGCCGGa---CCGcauac -5'
5141 3' -56.9 NC_001798.1 + 90408 0.71 0.593958
Target:  5'- gGGCCGGCGcguuCCCGCGGCCgGGCu---- -3'
miRNA:   3'- -CUGGUUGU----GGGUGCCGGaCCGcauac -5'
5141 3' -56.9 NC_001798.1 + 92980 0.7 0.664354
Target:  5'- cGCCGugGCCCgcGCGGCCgcccaccUGGCGUu-- -3'
miRNA:   3'- cUGGUugUGGG--UGCCGG-------ACCGCAuac -5'
5141 3' -56.9 NC_001798.1 + 93253 0.72 0.553593
Target:  5'- gGGCCAggaaACGCCCGCGGCCcgcgccGGCGc--- -3'
miRNA:   3'- -CUGGU----UGUGGGUGCCGGa-----CCGCauac -5'
5141 3' -56.9 NC_001798.1 + 93981 0.7 0.675532
Target:  5'- gGACCAGgcggUGCCCACGGCcCUGGgGa--- -3'
miRNA:   3'- -CUGGUU----GUGGGUGCCG-GACCgCauac -5'
5141 3' -56.9 NC_001798.1 + 95281 0.66 0.843654
Target:  5'- uGGCCuGC-CCCAgGGCCgGGUuuGUGUGc -3'
miRNA:   3'- -CUGGuUGuGGGUgCCGGaCCG--CAUAC- -5'
5141 3' -56.9 NC_001798.1 + 96354 0.66 0.851616
Target:  5'- --gCGGCACCUGCGGCCggGGCu---- -3'
miRNA:   3'- cugGUUGUGGGUGCCGGa-CCGcauac -5'
5141 3' -56.9 NC_001798.1 + 96814 0.78 0.244737
Target:  5'- cGACCAuCGCCCGCcGCCUGGCGg--- -3'
miRNA:   3'- -CUGGUuGUGGGUGcCGGACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 102365 0.66 0.85938
Target:  5'- cGGCCGccggaaGCCCACccGCCUGGCGg--- -3'
miRNA:   3'- -CUGGUug----UGGGUGc-CGGACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 103021 0.67 0.835501
Target:  5'- cGGCCAGCGCgagcuCGGCCUcGGCGg--- -3'
miRNA:   3'- -CUGGUUGUGggu--GCCGGA-CCGCauac -5'
5141 3' -56.9 NC_001798.1 + 109547 0.72 0.54362
Target:  5'- --aCAGC-CCCGCGGCCuaUGGCGcgGUGg -3'
miRNA:   3'- cugGUUGuGGGUGCCGG--ACCGCa-UAC- -5'
5141 3' -56.9 NC_001798.1 + 109963 0.67 0.801122
Target:  5'- uGGCaCAACagACCCGCGGCgUGGCc---- -3'
miRNA:   3'- -CUG-GUUG--UGGGUGCCGgACCGcauac -5'
5141 3' -56.9 NC_001798.1 + 112033 0.69 0.725626
Target:  5'- cACCAGCACCCcCGGgCUGGUu---- -3'
miRNA:   3'- cUGGUUGUGGGuGCCgGACCGcauac -5'
5141 3' -56.9 NC_001798.1 + 114997 0.67 0.827164
Target:  5'- gGGCCAAC-CUcguCACGGCgCUGGUG-AUGg -3'
miRNA:   3'- -CUGGUUGuGG---GUGCCG-GACCGCaUAC- -5'
5141 3' -56.9 NC_001798.1 + 115593 0.71 0.614334
Target:  5'- cGCCu-CGCCCACGGCCgGGUccgGUGg -3'
miRNA:   3'- cUGGuuGUGGGUGCCGGaCCGca-UAC- -5'
5141 3' -56.9 NC_001798.1 + 117655 0.67 0.809966
Target:  5'- cGCCGGCccugcaACCCgcggggacgcGCGGCCggcGGCGUGUa -3'
miRNA:   3'- cUGGUUG------UGGG----------UGCCGGa--CCGCAUAc -5'
5141 3' -56.9 NC_001798.1 + 120359 0.66 0.85938
Target:  5'- cGCCAGCA-CCugGGCgaGGC-UGUGc -3'
miRNA:   3'- cUGGUUGUgGGugCCGgaCCGcAUAC- -5'
5141 3' -56.9 NC_001798.1 + 122459 0.67 0.827164
Target:  5'- cACCAGCuguccCCCGCGGCCcagacGGCGc--- -3'
miRNA:   3'- cUGGUUGu----GGGUGCCGGa----CCGCauac -5'
5141 3' -56.9 NC_001798.1 + 124729 0.68 0.764309
Target:  5'- aACCAGC-CCCGCaGGCa-GGCGUGa- -3'
miRNA:   3'- cUGGUUGuGGGUG-CCGgaCCGCAUac -5'
5141 3' -56.9 NC_001798.1 + 125462 0.7 0.634763
Target:  5'- -cCCGACGCCCgggaccACGGUCUGGUGg--- -3'
miRNA:   3'- cuGGUUGUGGG------UGCCGGACCGCauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.