miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5141 3' -56.9 NC_001798.1 + 34044 0.69 0.685657
Target:  5'- cGCC-ACACCCACGGCUgUGGCc---- -3'
miRNA:   3'- cUGGuUGUGGGUGCCGG-ACCGcauac -5'
5141 3' -56.9 NC_001798.1 + 37152 0.7 0.675532
Target:  5'- uGGCCGcucGCGCCgCGCcGCCUGGCGg--- -3'
miRNA:   3'- -CUGGU---UGUGG-GUGcCGGACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 44402 0.68 0.782064
Target:  5'- gGGCCGggaGCAaugggguCCCGCGGCCcagGGCGUc-- -3'
miRNA:   3'- -CUGGU---UGU-------GGGUGCCGGa--CCGCAuac -5'
5141 3' -56.9 NC_001798.1 + 47956 0.73 0.475769
Target:  5'- cGACCGACcccGCCCGCGGCa-GGCGa--- -3'
miRNA:   3'- -CUGGUUG---UGGGUGCCGgaCCGCauac -5'
5141 3' -56.9 NC_001798.1 + 48355 0.69 0.715731
Target:  5'- cGACCGcggcCGCCCGgGGCCgccccgcggGGCGUGc- -3'
miRNA:   3'- -CUGGUu---GUGGGUgCCGGa--------CCGCAUac -5'
5141 3' -56.9 NC_001798.1 + 49303 0.69 0.725626
Target:  5'- cGACauucGCGCCCACGGCgacgUGGCGUu-- -3'
miRNA:   3'- -CUGgu--UGUGGGUGCCGg---ACCGCAuac -5'
5141 3' -56.9 NC_001798.1 + 52430 0.67 0.817789
Target:  5'- cGGCCGuguacgcGCugCaCACGGcCCUGGCGa--- -3'
miRNA:   3'- -CUGGU-------UGugG-GUGCC-GGACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 57144 0.71 0.614334
Target:  5'- cGACCGaguACAgCCGCGGgCUGGCGc--- -3'
miRNA:   3'- -CUGGU---UGUgGGUGCCgGACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 58110 0.69 0.73544
Target:  5'- cGGCC---GCCCAgGGCCcGGCGUcUGg -3'
miRNA:   3'- -CUGGuugUGGGUgCCGGaCCGCAuAC- -5'
5141 3' -56.9 NC_001798.1 + 63440 0.66 0.881419
Target:  5'- aGCCGguacacGCGCgCCGCcucgGGCUUGGCGUGg- -3'
miRNA:   3'- cUGGU------UGUG-GGUG----CCGGACCGCAUac -5'
5141 3' -56.9 NC_001798.1 + 66838 0.66 0.85938
Target:  5'- uGCCGGCGCCCA-GGCC-GGgGUu-- -3'
miRNA:   3'- cUGGUUGUGGGUgCCGGaCCgCAuac -5'
5141 3' -56.9 NC_001798.1 + 71082 0.67 0.801122
Target:  5'- aGCCGcgucaGCCCGCGGUC-GGCGUGc- -3'
miRNA:   3'- cUGGUug---UGGGUGCCGGaCCGCAUac -5'
5141 3' -56.9 NC_001798.1 + 72141 0.69 0.685657
Target:  5'- aACCGGcCACCCG-GGCC-GGCGUcgGg -3'
miRNA:   3'- cUGGUU-GUGGGUgCCGGaCCGCAuaC- -5'
5141 3' -56.9 NC_001798.1 + 72306 0.66 0.85938
Target:  5'- uGAUCAGCAUgUACGcCCUGGCGg--- -3'
miRNA:   3'- -CUGGUUGUGgGUGCcGGACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 76346 0.68 0.745165
Target:  5'- gGGCCAGCcccuagauGCCCccgaggaccugGCGGCCUGGCu---- -3'
miRNA:   3'- -CUGGUUG--------UGGG-----------UGCCGGACCGcauac -5'
5141 3' -56.9 NC_001798.1 + 78599 0.67 0.818649
Target:  5'- aGAUCGAgGCCgAgGGCCUGGCc---- -3'
miRNA:   3'- -CUGGUUgUGGgUgCCGGACCGcauac -5'
5141 3' -56.9 NC_001798.1 + 79271 0.7 0.675532
Target:  5'- cGACgCGGCGgCCGCGGaCCUGGCcccGUGg -3'
miRNA:   3'- -CUG-GUUGUgGGUGCC-GGACCGca-UAC- -5'
5141 3' -56.9 NC_001798.1 + 79367 0.68 0.77371
Target:  5'- cGCCAGgGCCgGCGGCCagacgGGCGc--- -3'
miRNA:   3'- cUGGUUgUGGgUGCCGGa----CCGCauac -5'
5141 3' -56.9 NC_001798.1 + 81410 0.68 0.782986
Target:  5'- gGGCCuGgAUCCACGGCCuggaggagcUGGCGUccGa -3'
miRNA:   3'- -CUGGuUgUGGGUGCCGG---------ACCGCAuaC- -5'
5141 3' -56.9 NC_001798.1 + 82054 0.67 0.835501
Target:  5'- cGCCGACACCCccccggggccccGCGGCC-GGCc---- -3'
miRNA:   3'- cUGGUUGUGGG------------UGCCGGaCCGcauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.