Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 136854 | 0.7 | 0.675532 |
Target: 5'- cGCCGACACCUugacgaacagcgAgGGCgUGGCGUGg- -3' miRNA: 3'- cUGGUUGUGGG------------UgCCGgACCGCAUac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 79271 | 0.7 | 0.675532 |
Target: 5'- cGACgCGGCGgCCGCGGaCCUGGCcccGUGg -3' miRNA: 3'- -CUG-GUUGUgGGUGCC-GGACCGca-UAC- -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 37152 | 0.7 | 0.675532 |
Target: 5'- uGGCCGcucGCGCCgCGCcGCCUGGCGg--- -3' miRNA: 3'- -CUGGU---UGUGG-GUGcCGGACCGCauac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 72141 | 0.69 | 0.685657 |
Target: 5'- aACCGGcCACCCG-GGCC-GGCGUcgGg -3' miRNA: 3'- cUGGUU-GUGGGUgCCGGaCCGCAuaC- -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 34044 | 0.69 | 0.685657 |
Target: 5'- cGCC-ACACCCACGGCUgUGGCc---- -3' miRNA: 3'- cUGGuUGUGGGUGCCGG-ACCGcauac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 48355 | 0.69 | 0.715731 |
Target: 5'- cGACCGcggcCGCCCGgGGCCgccccgcggGGCGUGc- -3' miRNA: 3'- -CUGGUu---GUGGGUgCCGGa--------CCGCAUac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 112033 | 0.69 | 0.725626 |
Target: 5'- cACCAGCACCCcCGGgCUGGUu---- -3' miRNA: 3'- cUGGUUGUGGGuGCCgGACCGcauac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 49303 | 0.69 | 0.725626 |
Target: 5'- cGACauucGCGCCCACGGCgacgUGGCGUu-- -3' miRNA: 3'- -CUGgu--UGUGGGUGCCGg---ACCGCAuac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 31738 | 0.69 | 0.731524 |
Target: 5'- aGACCGACACCCAagcacagagucugGGCCgGGCa---- -3' miRNA: 3'- -CUGGUUGUGGGUg------------CCGGaCCGcauac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 3108 | 0.69 | 0.73544 |
Target: 5'- cGGCCAgGCACuCCACGGCCacGCGg--- -3' miRNA: 3'- -CUGGU-UGUG-GGUGCCGGacCGCauac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 58110 | 0.69 | 0.73544 |
Target: 5'- cGGCC---GCCCAgGGCCcGGCGUcUGg -3' miRNA: 3'- -CUGGuugUGGGUgCCGGaCCGCAuAC- -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 76346 | 0.68 | 0.745165 |
Target: 5'- gGGCCAGCcccuagauGCCCccgaggaccugGCGGCCUGGCu---- -3' miRNA: 3'- -CUGGUUG--------UGGG-----------UGCCGGACCGcauac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 134603 | 0.68 | 0.754791 |
Target: 5'- cGACCAggaaggaggGCGCCUucGCGGaCCUGGUcgagGUGUGc -3' miRNA: 3'- -CUGGU---------UGUGGG--UGCC-GGACCG----CAUAC- -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 124729 | 0.68 | 0.764309 |
Target: 5'- aACCAGC-CCCGCaGGCa-GGCGUGa- -3' miRNA: 3'- cUGGUUGuGGGUG-CCGgaCCGCAUac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 4967 | 0.68 | 0.764309 |
Target: 5'- cGACCucGGC-CCCGCGGCCcUGcGCGUc-- -3' miRNA: 3'- -CUGG--UUGuGGGUGCCGG-AC-CGCAuac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 3537 | 0.68 | 0.77371 |
Target: 5'- aGCCGAagcgGCCCGCcGCCaUGGCGUAc- -3' miRNA: 3'- cUGGUUg---UGGGUGcCGG-ACCGCAUac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 79367 | 0.68 | 0.77371 |
Target: 5'- cGCCAGgGCCgGCGGCCagacgGGCGc--- -3' miRNA: 3'- cUGGUUgUGGgUGCCGGa----CCGCauac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 44402 | 0.68 | 0.782064 |
Target: 5'- gGGCCGggaGCAaugggguCCCGCGGCCcagGGCGUc-- -3' miRNA: 3'- -CUGGU---UGU-------GGGUGCCGGa--CCGCAuac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 81410 | 0.68 | 0.782986 |
Target: 5'- gGGCCuGgAUCCACGGCCuggaggagcUGGCGUccGa -3' miRNA: 3'- -CUGGuUgUGGGUGCCGG---------ACCGCAuaC- -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 134454 | 0.68 | 0.782986 |
Target: 5'- cGCCgAGCACCC-CGGCgcgcggUUGGCGUGg- -3' miRNA: 3'- cUGG-UUGUGGGuGCCG------GACCGCAUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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