miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5141 3' -56.9 NC_001798.1 + 127478 1.08 0.002426
Target:  5'- aGACCAACACCCACGGCCUGGCGUAUGa -3'
miRNA:   3'- -CUGGUUGUGGGUGCCGGACCGCAUAC- -5'
5141 3' -56.9 NC_001798.1 + 96814 0.78 0.244737
Target:  5'- cGACCAuCGCCCGCcGCCUGGCGg--- -3'
miRNA:   3'- -CUGGUuGUGGGUGcCGGACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 129341 0.78 0.262936
Target:  5'- cGGCCGcggaGCGCCCGCcgGGCCUGGCGg--- -3'
miRNA:   3'- -CUGGU----UGUGGGUG--CCGGACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 139331 0.74 0.438931
Target:  5'- cGCCGGCGCCCgcgcgcgcuguGCGGCCaUGGCGg--- -3'
miRNA:   3'- cUGGUUGUGGG-----------UGCCGG-ACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 141032 0.73 0.466412
Target:  5'- -uCCAGCGCCC-CGGCCUGGaCGc--- -3'
miRNA:   3'- cuGGUUGUGGGuGCCGGACC-GCauac -5'
5141 3' -56.9 NC_001798.1 + 47956 0.73 0.475769
Target:  5'- cGACCGACcccGCCCGCGGCa-GGCGa--- -3'
miRNA:   3'- -CUGGUUG---UGGGUGCCGgaCCGCauac -5'
5141 3' -56.9 NC_001798.1 + 24892 0.73 0.494756
Target:  5'- cGCCGGgGCCCugGGCCcGGCGc--- -3'
miRNA:   3'- cUGGUUgUGGGugCCGGaCCGCauac -5'
5141 3' -56.9 NC_001798.1 + 138732 0.72 0.54362
Target:  5'- gGGCCGGCGCgcuCCGCGGCCccGGCGaccGUGg -3'
miRNA:   3'- -CUGGUUGUG---GGUGCCGGa-CCGCa--UAC- -5'
5141 3' -56.9 NC_001798.1 + 109547 0.72 0.54362
Target:  5'- --aCAGC-CCCGCGGCCuaUGGCGcgGUGg -3'
miRNA:   3'- cugGUUGuGGGUGCCGG--ACCGCa-UAC- -5'
5141 3' -56.9 NC_001798.1 + 93253 0.72 0.553593
Target:  5'- gGGCCAggaaACGCCCGCGGCCcgcgccGGCGc--- -3'
miRNA:   3'- -CUGGU----UGUGGGUGCCGGa-----CCGCauac -5'
5141 3' -56.9 NC_001798.1 + 138763 0.71 0.583808
Target:  5'- nGGCCAGCugCCGgGGCa--GCGUGUGc -3'
miRNA:   3'- -CUGGUUGugGGUgCCGgacCGCAUAC- -5'
5141 3' -56.9 NC_001798.1 + 90408 0.71 0.593958
Target:  5'- gGGCCGGCGcguuCCCGCGGCCgGGCu---- -3'
miRNA:   3'- -CUGGUUGU----GGGUGCCGGaCCGcauac -5'
5141 3' -56.9 NC_001798.1 + 1202 0.71 0.611273
Target:  5'- cGGCCAGCaccguccccgcgcgGCCCGCGGCCgacgcccaGCGUAUc -3'
miRNA:   3'- -CUGGUUG--------------UGGGUGCCGGac------CGCAUAc -5'
5141 3' -56.9 NC_001798.1 + 115593 0.71 0.614334
Target:  5'- cGCCu-CGCCCACGGCCgGGUccgGUGg -3'
miRNA:   3'- cUGGuuGUGGGUGCCGGaCCGca-UAC- -5'
5141 3' -56.9 NC_001798.1 + 57144 0.71 0.614334
Target:  5'- cGACCGaguACAgCCGCGGgCUGGCGc--- -3'
miRNA:   3'- -CUGGU---UGUgGGUGCCgGACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 125462 0.7 0.634763
Target:  5'- -cCCGACGCCCgggaccACGGUCUGGUGg--- -3'
miRNA:   3'- cuGGUUGUGGG------UGCCGGACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 128841 0.7 0.655184
Target:  5'- -cCCGGCGCCCccGCGGCCUccGCGUAc- -3'
miRNA:   3'- cuGGUUGUGGG--UGCCGGAc-CGCAUac -5'
5141 3' -56.9 NC_001798.1 + 92980 0.7 0.664354
Target:  5'- cGCCGugGCCCgcGCGGCCgcccaccUGGCGUu-- -3'
miRNA:   3'- cUGGUugUGGG--UGCCGG-------ACCGCAuac -5'
5141 3' -56.9 NC_001798.1 + 17872 0.7 0.665371
Target:  5'- gGGCUuGCACCCGCGGCUgaUGGCc---- -3'
miRNA:   3'- -CUGGuUGUGGGUGCCGG--ACCGcauac -5'
5141 3' -56.9 NC_001798.1 + 79271 0.7 0.675532
Target:  5'- cGACgCGGCGgCCGCGGaCCUGGCcccGUGg -3'
miRNA:   3'- -CUG-GUUGUgGGUGCC-GGACCGca-UAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.