Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5141 | 3' | -56.9 | NC_001798.1 | + | 131552 | 0.67 | 0.801122 |
Target: 5'- cGCgAGCGCCCcgACGGCCcgGuGCGUAa- -3' miRNA: 3'- cUGgUUGUGGG--UGCCGGa-C-CGCAUac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 88667 | 0.67 | 0.801122 |
Target: 5'- uGGCCAccAgGCCCGCGGCCgugaGGCc---- -3' miRNA: 3'- -CUGGU--UgUGGGUGCCGGa---CCGcauac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 126212 | 0.67 | 0.801122 |
Target: 5'- cACCGACGCuCCuucaaGGCCUGGCu---- -3' miRNA: 3'- cUGGUUGUG-GGug---CCGGACCGcauac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 109963 | 0.67 | 0.801122 |
Target: 5'- uGGCaCAACagACCCGCGGCgUGGCc---- -3' miRNA: 3'- -CUG-GUUG--UGGGUGCCGgACCGcauac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 71082 | 0.67 | 0.801122 |
Target: 5'- aGCCGcgucaGCCCGCGGUC-GGCGUGc- -3' miRNA: 3'- cUGGUug---UGGGUGCCGGaCCGCAUac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 52430 | 0.67 | 0.817789 |
Target: 5'- cGGCCGuguacgcGCugCaCACGGcCCUGGCGa--- -3' miRNA: 3'- -CUGGU-------UGugG-GUGCC-GGACCGCauac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 4688 | 0.67 | 0.818649 |
Target: 5'- gGGCCAGCugCCGCGGCgaGaCGa--- -3' miRNA: 3'- -CUGGUUGugGGUGCCGgaCcGCauac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 78599 | 0.67 | 0.818649 |
Target: 5'- aGAUCGAgGCCgAgGGCCUGGCc---- -3' miRNA: 3'- -CUGGUUgUGGgUgCCGGACCGcauac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 103021 | 0.67 | 0.835501 |
Target: 5'- cGGCCAGCGCgagcuCGGCCUcGGCGg--- -3' miRNA: 3'- -CUGGUUGUGggu--GCCGGA-CCGCauac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 82054 | 0.67 | 0.835501 |
Target: 5'- cGCCGACACCCccccggggccccGCGGCC-GGCc---- -3' miRNA: 3'- cUGGUUGUGGG------------UGCCGGaCCGcauac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 23687 | 0.67 | 0.827164 |
Target: 5'- cGGCCGcgACGCCacgggccgcuuCACGGCCgGGCGg--- -3' miRNA: 3'- -CUGGU--UGUGG-----------GUGCCGGaCCGCauac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 130029 | 0.67 | 0.827164 |
Target: 5'- cACCGGCuccCCCGCGGaCCuUGGCGcAUa -3' miRNA: 3'- cUGGUUGu--GGGUGCC-GG-ACCGCaUAc -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 122459 | 0.67 | 0.827164 |
Target: 5'- cACCAGCuguccCCCGCGGCCcagacGGCGc--- -3' miRNA: 3'- cUGGUUGu----GGGUGCCGGa----CCGCauac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 114997 | 0.67 | 0.827164 |
Target: 5'- gGGCCAAC-CUcguCACGGCgCUGGUG-AUGg -3' miRNA: 3'- -CUGGUUGuGG---GUGCCG-GACCGCaUAC- -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 153951 | 0.67 | 0.82632 |
Target: 5'- aGCCAGCGCCgcaggagcgaggaCGCGGCC-GGCGc--- -3' miRNA: 3'- cUGGUUGUGG-------------GUGCCGGaCCGCauac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 4037 | 0.67 | 0.818649 |
Target: 5'- cGGCCAcCGCCgCGCgGGCCcGGCGg--- -3' miRNA: 3'- -CUGGUuGUGG-GUG-CCGGaCCGCauac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 81410 | 0.68 | 0.782986 |
Target: 5'- gGGCCuGgAUCCACGGCCuggaggagcUGGCGUccGa -3' miRNA: 3'- -CUGGuUgUGGGUGCCGG---------ACCGCAuaC- -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 134454 | 0.68 | 0.782986 |
Target: 5'- cGCCgAGCACCC-CGGCgcgcggUUGGCGUGg- -3' miRNA: 3'- cUGG-UUGUGGGuGCCG------GACCGCAUac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 30670 | 0.68 | 0.782986 |
Target: 5'- uGugCAACACCC-CGGU--GGCGUAc- -3' miRNA: 3'- -CugGUUGUGGGuGCCGgaCCGCAUac -5' |
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5141 | 3' | -56.9 | NC_001798.1 | + | 44402 | 0.68 | 0.782064 |
Target: 5'- gGGCCGggaGCAaugggguCCCGCGGCCcagGGCGUc-- -3' miRNA: 3'- -CUGGU---UGU-------GGGUGCCGGa--CCGCAuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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