miRNA display CGI


Results 61 - 80 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5141 5' -55.8 NC_001798.1 + 139705 0.67 0.868355
Target:  5'- uGGUcaCgGGCGCCACCgaaUCGCGGc-- -3'
miRNA:   3'- -CCGuaGgCCGCGGUGGa--AGCGUUagg -5'
5141 5' -55.8 NC_001798.1 + 9144 0.67 0.868355
Target:  5'- cGGCAcgcgggCgCGGCGCCGCCcgCGCcggggggcagGGUCUc -3'
miRNA:   3'- -CCGUa-----G-GCCGCGGUGGaaGCG----------UUAGG- -5'
5141 5' -55.8 NC_001798.1 + 35447 0.67 0.868355
Target:  5'- gGGCcgCUGGCGCCGCggcccgucugCUggccCGCGGcCCg -3'
miRNA:   3'- -CCGuaGGCCGCGGUG----------GAa---GCGUUaGG- -5'
5141 5' -55.8 NC_001798.1 + 78446 0.67 0.868355
Target:  5'- cGGCGUacgCCGaGUauGUCGCCUUCGUGAcCCg -3'
miRNA:   3'- -CCGUA---GGC-CG--CGGUGGAAGCGUUaGG- -5'
5141 5' -55.8 NC_001798.1 + 128284 0.67 0.868355
Target:  5'- cGGCAccUCUGGCGCCugacgcGCCg-CGCccccccGUCCg -3'
miRNA:   3'- -CCGU--AGGCCGCGG------UGGaaGCGu-----UAGG- -5'
5141 5' -55.8 NC_001798.1 + 134917 0.67 0.868355
Target:  5'- cGGCcgCCGcCGCCGCCgagucggCGCGugaCCu -3'
miRNA:   3'- -CCGuaGGCcGCGGUGGaa-----GCGUua-GG- -5'
5141 5' -55.8 NC_001798.1 + 150005 0.68 0.860873
Target:  5'- gGGCGagCGGCccgugGCCGCggUCGCccgAGUCCg -3'
miRNA:   3'- -CCGUagGCCG-----CGGUGgaAGCG---UUAGG- -5'
5141 5' -55.8 NC_001798.1 + 53903 0.68 0.860873
Target:  5'- -aCGUuuGcGCGCCACCUggacCGCGggCCc -3'
miRNA:   3'- ccGUAggC-CGCGGUGGAa---GCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 153086 0.68 0.856286
Target:  5'- cGGCGgggCGGCGCCggGCCcUCGCGGauauauacgcggggcUCCc -3'
miRNA:   3'- -CCGUag-GCCGCGG--UGGaAGCGUU---------------AGG- -5'
5141 5' -55.8 NC_001798.1 + 41199 0.68 0.853188
Target:  5'- aGGUcgCCGGgGCCACCaugcugugCGCGGg-- -3'
miRNA:   3'- -CCGuaGGCCgCGGUGGaa------GCGUUagg -5'
5141 5' -55.8 NC_001798.1 + 135186 0.68 0.853188
Target:  5'- gGGC-UCCaGGCccagcuccugGCCGCCcUCGCGggCCu -3'
miRNA:   3'- -CCGuAGG-CCG----------CGGUGGaAGCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 94288 0.68 0.853188
Target:  5'- gGGCAgucggUCgaggGGCGCaACUUUCGCAAUCa -3'
miRNA:   3'- -CCGU-----AGg---CCGCGgUGGAAGCGUUAGg -5'
5141 5' -55.8 NC_001798.1 + 129466 0.68 0.853188
Target:  5'- gGGaCAUCCGGCgaaacagccGCCugGCCUUCGaCGAUa- -3'
miRNA:   3'- -CC-GUAGGCCG---------CGG--UGGAAGC-GUUAgg -5'
5141 5' -55.8 NC_001798.1 + 48361 0.68 0.853188
Target:  5'- cGGCcgcCCGGgGCCGCCc-CGCGGggcgugCCg -3'
miRNA:   3'- -CCGua-GGCCgCGGUGGaaGCGUUa-----GG- -5'
5141 5' -55.8 NC_001798.1 + 85046 0.68 0.853188
Target:  5'- uGCcgUCGaGCGCCGCCgugCGCGAagagucgCCg -3'
miRNA:   3'- cCGuaGGC-CGCGGUGGaa-GCGUUa------GG- -5'
5141 5' -55.8 NC_001798.1 + 118546 0.68 0.848481
Target:  5'- cGGC--CCGGCGCCAUgaucacggaUUguuucgaagcagacaUCGCGAUCCc -3'
miRNA:   3'- -CCGuaGGCCGCGGUG---------GA---------------AGCGUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 75614 0.68 0.845305
Target:  5'- cGCAgaUCgGGCGCCugGCCcUCGCuaagcuGGUCCu -3'
miRNA:   3'- cCGU--AGgCCGCGG--UGGaAGCG------UUAGG- -5'
5141 5' -55.8 NC_001798.1 + 31608 0.68 0.845305
Target:  5'- cGCGUCCGgaguccgccccGCGCCGCCgcCGCcc-CCg -3'
miRNA:   3'- cCGUAGGC-----------CGCGGUGGaaGCGuuaGG- -5'
5141 5' -55.8 NC_001798.1 + 34923 0.68 0.845305
Target:  5'- aGCcUCCGGgGCCcCUUUCGCg--CCu -3'
miRNA:   3'- cCGuAGGCCgCGGuGGAAGCGuuaGG- -5'
5141 5' -55.8 NC_001798.1 + 111803 0.68 0.845305
Target:  5'- -aCAUCCGuGCGCCGg--UCGCGggcGUCCa -3'
miRNA:   3'- ccGUAGGC-CGCGGUggaAGCGU---UAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.