miRNA display CGI


Results 41 - 60 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5141 5' -55.8 NC_001798.1 + 102355 0.67 0.890193
Target:  5'- uGGUcUCCGGCgGCCGCCggaagcccacccgccUgGCGGUCg -3'
miRNA:   3'- -CCGuAGGCCG-CGGUGGa--------------AgCGUUAGg -5'
5141 5' -55.8 NC_001798.1 + 51987 0.67 0.889522
Target:  5'- cGGCc-CCGaCGCCGCggucUUUCGCAGUUCg -3'
miRNA:   3'- -CCGuaGGCcGCGGUG----GAAGCGUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 103571 0.67 0.889522
Target:  5'- gGGCAga-GGCGCCuccaACCgcucgCGCAuuUCCg -3'
miRNA:   3'- -CCGUaggCCGCGG----UGGaa---GCGUu-AGG- -5'
5141 5' -55.8 NC_001798.1 + 32394 0.67 0.888848
Target:  5'- cGGCGcCCGGCcucacgcGCUACCUgcccaUCGCGgggGUCUc -3'
miRNA:   3'- -CCGUaGGCCG-------CGGUGGA-----AGCGU---UAGG- -5'
5141 5' -55.8 NC_001798.1 + 24414 0.67 0.886813
Target:  5'- cGGCGg-CGGCGUCGCCggccgacgagcgCGCGGUgCCc -3'
miRNA:   3'- -CCGUagGCCGCGGUGGaa----------GCGUUA-GG- -5'
5141 5' -55.8 NC_001798.1 + 139363 0.67 0.886813
Target:  5'- cGGCGUCCGGCGgggagggcUCGCGggacGUCCg -3'
miRNA:   3'- -CCGUAGGCCGCggugga--AGCGU----UAGG- -5'
5141 5' -55.8 NC_001798.1 + 139 0.67 0.882684
Target:  5'- cGGCcgCUcccccgcgGGCGCCGCCccucccccCGCGcgCCg -3'
miRNA:   3'- -CCGuaGG--------CCGCGGUGGaa------GCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 79998 0.67 0.882684
Target:  5'- gGGgGUCCcaGCGCCACUgcgUCGCcuUCa -3'
miRNA:   3'- -CCgUAGGc-CGCGGUGGa--AGCGuuAGg -5'
5141 5' -55.8 NC_001798.1 + 82082 0.67 0.882684
Target:  5'- cGGCccaccCCGGCGCCucacgcGCCc-CGCGGUCg -3'
miRNA:   3'- -CCGua---GGCCGCGG------UGGaaGCGUUAGg -5'
5141 5' -55.8 NC_001798.1 + 154477 0.67 0.882684
Target:  5'- cGGCcgCUcccccgcgGGCGCCGCCccucccccCGCGcgCCg -3'
miRNA:   3'- -CCGuaGG--------CCGCGGUGGaa------GCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 24719 0.67 0.882684
Target:  5'- gGGCccgCgGGCGCgGCCgccccgcCGCAcgCCg -3'
miRNA:   3'- -CCGua-GgCCGCGgUGGaa-----GCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 78270 0.67 0.882684
Target:  5'- cGGCGUgccccuggacCUGGCgGCCGCCgcggaGCAgauAUCCg -3'
miRNA:   3'- -CCGUA----------GGCCG-CGGUGGaag--CGU---UAGG- -5'
5141 5' -55.8 NC_001798.1 + 81997 0.67 0.882684
Target:  5'- cGGuCGUCCccgggGGCGaCCGCCgcCGCGG-CCg -3'
miRNA:   3'- -CC-GUAGG-----CCGC-GGUGGaaGCGUUaGG- -5'
5141 5' -55.8 NC_001798.1 + 152641 0.67 0.882684
Target:  5'- ----cCCGGCGCCccGCCggCGCGGcCCu -3'
miRNA:   3'- ccguaGGCCGCGG--UGGaaGCGUUaGG- -5'
5141 5' -55.8 NC_001798.1 + 75269 0.67 0.88059
Target:  5'- cGGCgGUCCGGCucgcggcgcgcgauGCCGCCcuggccCGCGAgguggCCg -3'
miRNA:   3'- -CCG-UAGGCCG--------------CGGUGGaa----GCGUUa----GG- -5'
5141 5' -55.8 NC_001798.1 + 70729 0.67 0.875627
Target:  5'- gGGCAacCCGGCGCCaACCUgaccaccccggCGUAcagCCu -3'
miRNA:   3'- -CCGUa-GGCCGCGG-UGGAa----------GCGUua-GG- -5'
5141 5' -55.8 NC_001798.1 + 3365 0.67 0.875627
Target:  5'- uGGCggUUGGCGUCGCCgccgUCGUcgggGGUUCg -3'
miRNA:   3'- -CCGuaGGCCGCGGUGGa---AGCG----UUAGG- -5'
5141 5' -55.8 NC_001798.1 + 23340 0.67 0.875627
Target:  5'- cGCcgCCGGCGCgcccccCGCCggCGCucggCCg -3'
miRNA:   3'- cCGuaGGCCGCG------GUGGaaGCGuua-GG- -5'
5141 5' -55.8 NC_001798.1 + 5960 0.67 0.875627
Target:  5'- cGGCGUcCCGGuCGCCGCC---GCA--CCa -3'
miRNA:   3'- -CCGUA-GGCC-GCGGUGGaagCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 128284 0.67 0.868355
Target:  5'- cGGCAccUCUGGCGCCugacgcGCCg-CGCccccccGUCCg -3'
miRNA:   3'- -CCGU--AGGCCGCGG------UGGaaGCGu-----UAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.