miRNA display CGI


Results 41 - 60 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5141 5' -55.8 NC_001798.1 + 31608 0.68 0.845305
Target:  5'- cGCGUCCGgaguccgccccGCGCCGCCgcCGCcc-CCg -3'
miRNA:   3'- cCGUAGGC-----------CGCGGUGGaaGCGuuaGG- -5'
5141 5' -55.8 NC_001798.1 + 32058 0.7 0.757226
Target:  5'- cGGCGUCCgcgGGCGCCgcGCCcccgUCgGCGucUCCg -3'
miRNA:   3'- -CCGUAGG---CCGCGG--UGGa---AG-CGUu-AGG- -5'
5141 5' -55.8 NC_001798.1 + 32394 0.67 0.888848
Target:  5'- cGGCGcCCGGCcucacgcGCUACCUgcccaUCGCGgggGUCUc -3'
miRNA:   3'- -CCGUaGGCCG-------CGGUGGA-----AGCGU---UAGG- -5'
5141 5' -55.8 NC_001798.1 + 32749 0.7 0.757226
Target:  5'- cGGCcUCCGGUcgcGCCACC--CGUGGUCUc -3'
miRNA:   3'- -CCGuAGGCCG---CGGUGGaaGCGUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 34923 0.68 0.845305
Target:  5'- aGCcUCCGGgGCCcCUUUCGCg--CCu -3'
miRNA:   3'- cCGuAGGCCgCGGuGGAAGCGuuaGG- -5'
5141 5' -55.8 NC_001798.1 + 35447 0.67 0.868355
Target:  5'- gGGCcgCUGGCGCCGCggcccgucugCUggccCGCGGcCCg -3'
miRNA:   3'- -CCGuaGGCCGCGGUG----------GAa---GCGUUaGG- -5'
5141 5' -55.8 NC_001798.1 + 40406 0.68 0.820539
Target:  5'- cGGCAggUCUGG-GuCCGCCUUCGCGu--- -3'
miRNA:   3'- -CCGU--AGGCCgC-GGUGGAAGCGUuagg -5'
5141 5' -55.8 NC_001798.1 + 41199 0.68 0.853188
Target:  5'- aGGUcgCCGGgGCCACCaugcugugCGCGGg-- -3'
miRNA:   3'- -CCGuaGGCCgCGGUGGaa------GCGUUagg -5'
5141 5' -55.8 NC_001798.1 + 43084 0.78 0.335106
Target:  5'- gGGC-UCgGGCGCCGCCgcCGC-GUCCg -3'
miRNA:   3'- -CCGuAGgCCGCGGUGGaaGCGuUAGG- -5'
5141 5' -55.8 NC_001798.1 + 44036 0.72 0.607487
Target:  5'- uGGC-UCCGGCGCCcCCcaagCGCGGagCCu -3'
miRNA:   3'- -CCGuAGGCCGCGGuGGaa--GCGUUa-GG- -5'
5141 5' -55.8 NC_001798.1 + 44860 0.69 0.811935
Target:  5'- gGGaaagCCGGCGCagaGCCgcgCGCGuguUCCg -3'
miRNA:   3'- -CCgua-GGCCGCGg--UGGaa-GCGUu--AGG- -5'
5141 5' -55.8 NC_001798.1 + 48361 0.68 0.853188
Target:  5'- cGGCcgcCCGGgGCCGCCc-CGCGGggcgugCCg -3'
miRNA:   3'- -CCGua-GGCCgCGGUGGaaGCGUUa-----GG- -5'
5141 5' -55.8 NC_001798.1 + 48789 0.71 0.678515
Target:  5'- cGGCAcccCCGGCGauucCCUUCGCGAgggCCc -3'
miRNA:   3'- -CCGUa--GGCCGCggu-GGAAGCGUUa--GG- -5'
5141 5' -55.8 NC_001798.1 + 51987 0.67 0.889522
Target:  5'- cGGCc-CCGaCGCCGCggucUUUCGCAGUUCg -3'
miRNA:   3'- -CCGuaGGCcGCGGUG----GAAGCGUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 52371 0.66 0.90868
Target:  5'- gGGCGacaCCGcggcGCGCCGCCUgcUCGCca-CCa -3'
miRNA:   3'- -CCGUa--GGC----CGCGGUGGA--AGCGuuaGG- -5'
5141 5' -55.8 NC_001798.1 + 53180 0.7 0.766669
Target:  5'- gGGCGUCCccgagcGGCG-CAUCUUCGCcggguGUCUg -3'
miRNA:   3'- -CCGUAGG------CCGCgGUGGAAGCGu----UAGG- -5'
5141 5' -55.8 NC_001798.1 + 53287 0.75 0.479471
Target:  5'- cGGCGUuucugaCCGGCGCCGa--UCGCAgcGUCCg -3'
miRNA:   3'- -CCGUA------GGCCGCGGUggaAGCGU--UAGG- -5'
5141 5' -55.8 NC_001798.1 + 53903 0.68 0.860873
Target:  5'- -aCGUuuGcGCGCCACCUggacCGCGggCCc -3'
miRNA:   3'- ccGUAggC-CGCGGUGGAa---GCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 54369 0.79 0.276438
Target:  5'- cGGCGUCCGGC-CCACCggggggccgcggCGCGGUCg -3'
miRNA:   3'- -CCGUAGGCCGcGGUGGaa----------GCGUUAGg -5'
5141 5' -55.8 NC_001798.1 + 54814 0.73 0.577164
Target:  5'- gGGCGUCgggcuUGGCGCCACCccCGCcg-CCg -3'
miRNA:   3'- -CCGUAG-----GCCGCGGUGGaaGCGuuaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.