Results 41 - 60 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5141 | 5' | -55.8 | NC_001798.1 | + | 2107 | 0.66 | 0.925748 |
Target: 5'- cGCccCCGGCGCgGCCcgCGgccaGGUCCu -3' miRNA: 3'- cCGuaGGCCGCGgUGGaaGCg---UUAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 24589 | 0.66 | 0.930455 |
Target: 5'- gGGCcgCgUGGCcguggagugccugGCCGCCUgccgCGgGAUCCu -3' miRNA: 3'- -CCGuaG-GCCG-------------CGGUGGAa---GCgUUAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 15819 | 0.66 | 0.930966 |
Target: 5'- aGGcCAUgaGGCGCCGCCcggUUCGgGGggcCCg -3' miRNA: 3'- -CC-GUAggCCGCGGUGG---AAGCgUUa--GG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 85291 | 0.66 | 0.930966 |
Target: 5'- gGGCGggggCCGGgGuCCGCC--CGCGGcCCg -3' miRNA: 3'- -CCGUa---GGCCgC-GGUGGaaGCGUUaGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 18607 | 0.66 | 0.930966 |
Target: 5'- cGgGUCCGcGCGCCGucCCgccgUGCAuagGUCCg -3' miRNA: 3'- cCgUAGGC-CGCGGU--GGaa--GCGU---UAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 59817 | 0.66 | 0.920294 |
Target: 5'- aGGCcuUCUucuucuggGGCGCCGCggUCGCccgcGUCCg -3' miRNA: 3'- -CCGu-AGG--------CCGCGGUGgaAGCGu---UAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 147167 | 0.66 | 0.916908 |
Target: 5'- gGGUAgccgcCCGGCGCCGggcggaaggcgucccCCgcccgGCGGUCCg -3' miRNA: 3'- -CCGUa----GGCCGCGGU---------------GGaag--CGUUAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 120627 | 0.67 | 0.902523 |
Target: 5'- aGGaCGggCCGGuCGUCGCCggucUCGCGggCCu -3' miRNA: 3'- -CC-GUa-GGCC-GCGGUGGa---AGCGUuaGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 104090 | 0.67 | 0.902523 |
Target: 5'- aGGCG-CaCGaGCGCCGCCUggCGgGcgCCc -3' miRNA: 3'- -CCGUaG-GC-CGCGGUGGAa-GCgUuaGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 128834 | 0.67 | 0.902523 |
Target: 5'- cGCGgaccCCGGCGCC-CC--CGCGGccUCCg -3' miRNA: 3'- cCGUa---GGCCGCGGuGGaaGCGUU--AGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 61819 | 0.66 | 0.90868 |
Target: 5'- cGCcgCCGcGgGCaCGCCUUCGCc--CCg -3' miRNA: 3'- cCGuaGGC-CgCG-GUGGAAGCGuuaGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 62555 | 0.66 | 0.90868 |
Target: 5'- cGGCuaugucgCCGGaCGUCGCCgccaCGUcAUCCa -3' miRNA: 3'- -CCGua-----GGCC-GCGGUGGaa--GCGuUAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 102540 | 0.66 | 0.90868 |
Target: 5'- cGCggCCGGCagGCCGCa--CGCGGUCa -3' miRNA: 3'- cCGuaGGCCG--CGGUGgaaGCGUUAGg -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 52371 | 0.66 | 0.90868 |
Target: 5'- gGGCGacaCCGcggcGCGCCGCCUgcUCGCca-CCa -3' miRNA: 3'- -CCGUa--GGC----CGCGGUGGA--AGCGuuaGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 109465 | 0.66 | 0.914604 |
Target: 5'- gGGCAUCUGGUGgC-----CGCGAUCCu -3' miRNA: 3'- -CCGUAGGCCGCgGuggaaGCGUUAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 91963 | 0.66 | 0.914604 |
Target: 5'- gGGCccccccGUCCGGCGCgAUCcggUgGCGggCCa -3' miRNA: 3'- -CCG------UAGGCCGCGgUGGa--AgCGUuaGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 135817 | 0.66 | 0.914604 |
Target: 5'- gGGCGUCauggaGGaCGCCugUgacCGCuuuGUCCu -3' miRNA: 3'- -CCGUAGg----CC-GCGGugGaa-GCGu--UAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 149683 | 0.66 | 0.914604 |
Target: 5'- gGGC--UCGGgGCCGCCcUCGCGuggcgcgucuUCCu -3' miRNA: 3'- -CCGuaGGCCgCGGUGGaAGCGUu---------AGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 20473 | 0.66 | 0.914604 |
Target: 5'- aGCAgagcgCCGGUG-CGCgUgCGCGAUCCc -3' miRNA: 3'- cCGUa----GGCCGCgGUGgAaGCGUUAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 113636 | 0.66 | 0.914604 |
Target: 5'- cGCggCCGGCGCCGCCaugugggUgGCGGc-- -3' miRNA: 3'- cCGuaGGCCGCGGUGGa------AgCGUUagg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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