miRNA display CGI


Results 41 - 60 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5141 5' -55.8 NC_001798.1 + 18838 0.7 0.728279
Target:  5'- uGGUucgcCCGGCGa-ACCUUCGCAGgcuggCCg -3'
miRNA:   3'- -CCGua--GGCCGCggUGGAAGCGUUa----GG- -5'
5141 5' -55.8 NC_001798.1 + 29002 0.7 0.728279
Target:  5'- cGGCcaaCCGcGCGCCGCCg-CGCGggCCc -3'
miRNA:   3'- -CCGua-GGC-CGCGGUGGaaGCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 145561 0.7 0.728279
Target:  5'- cGCG-CCGGCGCCcCCUcccggCGCu-UCCg -3'
miRNA:   3'- cCGUaGGCCGCGGuGGAa----GCGuuAGG- -5'
5141 5' -55.8 NC_001798.1 + 79106 0.7 0.728279
Target:  5'- gGGCGUCCugGGCGCCaagggcGCCgagcgCGCGGaggCCg -3'
miRNA:   3'- -CCGUAGG--CCGCGG------UGGaa---GCGUUa--GG- -5'
5141 5' -55.8 NC_001798.1 + 59481 0.7 0.738022
Target:  5'- aGGCGUUCGGCcaCCACCcgUUGCcGUCa -3'
miRNA:   3'- -CCGUAGGCCGc-GGUGGa-AGCGuUAGg -5'
5141 5' -55.8 NC_001798.1 + 74873 0.7 0.738022
Target:  5'- gGGCAgugCCGGUgggucGCCACCgggCGCGcuAUUCu -3'
miRNA:   3'- -CCGUa--GGCCG-----CGGUGGaa-GCGU--UAGG- -5'
5141 5' -55.8 NC_001798.1 + 122475 0.7 0.738022
Target:  5'- cGGCccagaCGGCGCUGCUgcgUCGCuuUCCc -3'
miRNA:   3'- -CCGuag--GCCGCGGUGGa--AGCGuuAGG- -5'
5141 5' -55.8 NC_001798.1 + 97 0.7 0.747674
Target:  5'- gGGCAgccCCGcGCGCCcCCUUCcCcGUCCc -3'
miRNA:   3'- -CCGUa--GGC-CGCGGuGGAAGcGuUAGG- -5'
5141 5' -55.8 NC_001798.1 + 154435 0.7 0.747674
Target:  5'- gGGCAgccCCGcGCGCCcCCUUCcCcGUCCc -3'
miRNA:   3'- -CCGUa--GGC-CGCGGuGGAAGcGuUAGG- -5'
5141 5' -55.8 NC_001798.1 + 3030 0.7 0.756276
Target:  5'- gGGC-UCCGGCcagccccggcacgGCCGCCaggUCGCcGUCg -3'
miRNA:   3'- -CCGuAGGCCG-------------CGGUGGa--AGCGuUAGg -5'
5141 5' -55.8 NC_001798.1 + 15105 0.7 0.757226
Target:  5'- aGGCGaggCCGGUGgCGCUgUCGUcGUCCu -3'
miRNA:   3'- -CCGUa--GGCCGCgGUGGaAGCGuUAGG- -5'
5141 5' -55.8 NC_001798.1 + 32749 0.7 0.757226
Target:  5'- cGGCcUCCGGUcgcGCCACC--CGUGGUCUc -3'
miRNA:   3'- -CCGuAGGCCG---CGGUGGaaGCGUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 32058 0.7 0.757226
Target:  5'- cGGCGUCCgcgGGCGCCgcGCCcccgUCgGCGucUCCg -3'
miRNA:   3'- -CCGUAGG---CCGCGG--UGGa---AG-CGUu-AGG- -5'
5141 5' -55.8 NC_001798.1 + 23638 0.7 0.757226
Target:  5'- cGGCGaCCGcGgGCCGCCUggagCGCcg-CCg -3'
miRNA:   3'- -CCGUaGGC-CgCGGUGGAa---GCGuuaGG- -5'
5141 5' -55.8 NC_001798.1 + 95698 0.7 0.761017
Target:  5'- gGGCggCCGGCGUCGCCcgaaagCGggcguuucacggcgaCGAUCCg -3'
miRNA:   3'- -CCGuaGGCCGCGGUGGaa----GC---------------GUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 96457 0.7 0.766669
Target:  5'- cGGC-UCCuGgGCCACCUggaaacguUCGCGA-CCa -3'
miRNA:   3'- -CCGuAGGcCgCGGUGGA--------AGCGUUaGG- -5'
5141 5' -55.8 NC_001798.1 + 53180 0.7 0.766669
Target:  5'- gGGCGUCCccgagcGGCG-CAUCUUCGCcggguGUCUg -3'
miRNA:   3'- -CCGUAGG------CCGCgGUGGAAGCGu----UAGG- -5'
5141 5' -55.8 NC_001798.1 + 103404 0.69 0.775993
Target:  5'- aGCAcCCGGC-CCACCU-CGCA--CCg -3'
miRNA:   3'- cCGUaGGCCGcGGUGGAaGCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 25819 0.69 0.775993
Target:  5'- gGGCugcuggCCGGCGCCugCgacCGCcg-CCu -3'
miRNA:   3'- -CCGua----GGCCGCGGugGaa-GCGuuaGG- -5'
5141 5' -55.8 NC_001798.1 + 106097 0.69 0.775993
Target:  5'- cGGCGacCCGGCGCCGCgacCGCcgGGUCUg -3'
miRNA:   3'- -CCGUa-GGCCGCGGUGgaaGCG--UUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.