miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5141 5' -55.8 NC_001798.1 + 108543 0.73 0.597351
Target:  5'- cGCAcaaccCCGGCGCCuCCgcgcugUUGCGGUCCc -3'
miRNA:   3'- cCGUa----GGCCGCGGuGGa-----AGCGUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 28956 0.72 0.607487
Target:  5'- gGGC--CCGGCGCCGCCc-CGCcgcUCCg -3'
miRNA:   3'- -CCGuaGGCCGCGGUGGaaGCGuu-AGG- -5'
5141 5' -55.8 NC_001798.1 + 121371 0.72 0.607487
Target:  5'- uGGCGUUCGGCguuuGCCGCCUaCGUg--CCg -3'
miRNA:   3'- -CCGUAGGCCG----CGGUGGAaGCGuuaGG- -5'
5141 5' -55.8 NC_001798.1 + 143392 0.72 0.607487
Target:  5'- cGCGUCCGGUGCgGuCCc-CGCAAUCg -3'
miRNA:   3'- cCGUAGGCCGCGgU-GGaaGCGUUAGg -5'
5141 5' -55.8 NC_001798.1 + 44036 0.72 0.607487
Target:  5'- uGGC-UCCGGCGCCcCCcaagCGCGGagCCu -3'
miRNA:   3'- -CCGuAGGCCGCGGuGGaa--GCGUUa-GG- -5'
5141 5' -55.8 NC_001798.1 + 128135 0.72 0.637971
Target:  5'- uGGCggaaacGUUCGaGCGCCACCUgCGCGG-CCu -3'
miRNA:   3'- -CCG------UAGGC-CGCGGUGGAaGCGUUaGG- -5'
5141 5' -55.8 NC_001798.1 + 75212 0.72 0.648134
Target:  5'- aGCcccCCGGCGCCgACCUggCGCAgcuguucgagGUCCa -3'
miRNA:   3'- cCGua-GGCCGCGG-UGGAa-GCGU----------UAGG- -5'
5141 5' -55.8 NC_001798.1 + 4889 0.72 0.648134
Target:  5'- cGGCuggauccggagAUCCGGgGCCGCCggUCGUc-UCCg -3'
miRNA:   3'- -CCG-----------UAGGCCgCGGUGGa-AGCGuuAGG- -5'
5141 5' -55.8 NC_001798.1 + 117751 0.72 0.658284
Target:  5'- aGCGacCCGGCGCgC-CCUUCGCGG-CCa -3'
miRNA:   3'- cCGUa-GGCCGCG-GuGGAAGCGUUaGG- -5'
5141 5' -55.8 NC_001798.1 + 73978 0.72 0.658284
Target:  5'- gGGC-UCCGG-GCCGCCg-CGCAuguguUCCa -3'
miRNA:   3'- -CCGuAGGCCgCGGUGGaaGCGUu----AGG- -5'
5141 5' -55.8 NC_001798.1 + 21662 0.71 0.668414
Target:  5'- cGGCGUCUcugucucgcuguGGC-CC-CCUUCGCGAUgCCg -3'
miRNA:   3'- -CCGUAGG------------CCGcGGuGGAAGCGUUA-GG- -5'
5141 5' -55.8 NC_001798.1 + 25260 0.71 0.678515
Target:  5'- gGGCggCUGGCGCCGCCa--GCcg-CCg -3'
miRNA:   3'- -CCGuaGGCCGCGGUGGaagCGuuaGG- -5'
5141 5' -55.8 NC_001798.1 + 153832 0.71 0.678515
Target:  5'- cGGCGUgCGGgGCCuCCggCGCcuUCCc -3'
miRNA:   3'- -CCGUAgGCCgCGGuGGaaGCGuuAGG- -5'
5141 5' -55.8 NC_001798.1 + 48789 0.71 0.678515
Target:  5'- cGGCAcccCCGGCGauucCCUUCGCGAgggCCc -3'
miRNA:   3'- -CCGUa--GGCCGCggu-GGAAGCGUUa--GG- -5'
5141 5' -55.8 NC_001798.1 + 97129 0.71 0.688578
Target:  5'- uGGCGUCCGGCGaucgCGCC--CGCcacUCCa -3'
miRNA:   3'- -CCGUAGGCCGCg---GUGGaaGCGuu-AGG- -5'
5141 5' -55.8 NC_001798.1 + 144515 0.71 0.688578
Target:  5'- aGGCGaguaugCCGGCGCCgACC-UCGC-GUCg -3'
miRNA:   3'- -CCGUa-----GGCCGCGG-UGGaAGCGuUAGg -5'
5141 5' -55.8 NC_001798.1 + 79956 0.71 0.688578
Target:  5'- gGGCGUCCggagcggcGGCGCCGCgUcCGCcg-CCg -3'
miRNA:   3'- -CCGUAGG--------CCGCGGUGgAaGCGuuaGG- -5'
5141 5' -55.8 NC_001798.1 + 105266 0.71 0.698595
Target:  5'- cGGCAUCCgccucuucGGcCGCgGCCgcCGCGGUCUc -3'
miRNA:   3'- -CCGUAGG--------CC-GCGgUGGaaGCGUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 153373 0.71 0.707563
Target:  5'- cGGCcgCCgccacgcGGCGCCggaACCggUCGCGGUCg -3'
miRNA:   3'- -CCGuaGG-------CCGCGG---UGGa-AGCGUUAGg -5'
5141 5' -55.8 NC_001798.1 + 153177 0.71 0.708557
Target:  5'- gGGCuccgCCGGCcgagGCCGCCcUCGcCGGUUCa -3'
miRNA:   3'- -CCGua--GGCCG----CGGUGGaAGC-GUUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.