miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5141 5' -55.8 NC_001798.1 + 19383 0.75 0.470124
Target:  5'- cGCAUCCGGCGacCCACCccaCGCAGcgCCc -3'
miRNA:   3'- cCGUAGGCCGC--GGUGGaa-GCGUUa-GG- -5'
5141 5' -55.8 NC_001798.1 + 20473 0.66 0.914604
Target:  5'- aGCAgagcgCCGGUG-CGCgUgCGCGAUCCc -3'
miRNA:   3'- cCGUa----GGCCGCgGUGgAaGCGUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 21662 0.71 0.668414
Target:  5'- cGGCGUCUcugucucgcuguGGC-CC-CCUUCGCGAUgCCg -3'
miRNA:   3'- -CCGUAGG------------CCGcGGuGGAAGCGUUA-GG- -5'
5141 5' -55.8 NC_001798.1 + 22972 0.68 0.820539
Target:  5'- cGGCGUCCGGgGagGCCgUCGaCGAgCCu -3'
miRNA:   3'- -CCGUAGGCCgCggUGGaAGC-GUUaGG- -5'
5141 5' -55.8 NC_001798.1 + 23340 0.67 0.875627
Target:  5'- cGCcgCCGGCGCgcccccCGCCggCGCucggCCg -3'
miRNA:   3'- cCGuaGGCCGCG------GUGGaaGCGuua-GG- -5'
5141 5' -55.8 NC_001798.1 + 23638 0.7 0.757226
Target:  5'- cGGCGaCCGcGgGCCGCCUggagCGCcg-CCg -3'
miRNA:   3'- -CCGUaGGC-CgCGGUGGAa---GCGuuaGG- -5'
5141 5' -55.8 NC_001798.1 + 23752 0.75 0.46087
Target:  5'- cGGCcUCCGGCGCCuuCUaCGCGcgCUa -3'
miRNA:   3'- -CCGuAGGCCGCGGugGAaGCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 24414 0.67 0.886813
Target:  5'- cGGCGg-CGGCGUCGCCggccgacgagcgCGCGGUgCCc -3'
miRNA:   3'- -CCGUagGCCGCGGUGGaa----------GCGUUA-GG- -5'
5141 5' -55.8 NC_001798.1 + 24589 0.66 0.930455
Target:  5'- gGGCcgCgUGGCcguggagugccugGCCGCCUgccgCGgGAUCCu -3'
miRNA:   3'- -CCGuaG-GCCG-------------CGGUGGAa---GCgUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 24719 0.67 0.882684
Target:  5'- gGGCccgCgGGCGCgGCCgccccgcCGCAcgCCg -3'
miRNA:   3'- -CCGua-GgCCGCGgUGGaa-----GCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 25260 0.71 0.678515
Target:  5'- gGGCggCUGGCGCCGCCa--GCcg-CCg -3'
miRNA:   3'- -CCGuaGGCCGCGGUGGaagCGuuaGG- -5'
5141 5' -55.8 NC_001798.1 + 25819 0.69 0.775993
Target:  5'- gGGCugcuggCCGGCGCCugCgacCGCcg-CCu -3'
miRNA:   3'- -CCGua----GGCCGCGGugGaa-GCGuuaGG- -5'
5141 5' -55.8 NC_001798.1 + 26188 0.66 0.920294
Target:  5'- cGGCGcuggacggCCGGgcCGCCGCCUcgggCGCGGgcgacgCCa -3'
miRNA:   3'- -CCGUa-------GGCC--GCGGUGGAa---GCGUUa-----GG- -5'
5141 5' -55.8 NC_001798.1 + 26558 0.66 0.920294
Target:  5'- cGCGgggCUGGCcacGCCGCCgaggCGCGAgCCc -3'
miRNA:   3'- cCGUa--GGCCG---CGGUGGaa--GCGUUaGG- -5'
5141 5' -55.8 NC_001798.1 + 27640 0.69 0.811935
Target:  5'- cGCcgCCGcCGcCCGCCUUCGCGccCCc -3'
miRNA:   3'- cCGuaGGCcGC-GGUGGAAGCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 27937 0.67 0.902523
Target:  5'- cGGgGUcCCGGCGCCgGCCgcgccccggCGC--UCCa -3'
miRNA:   3'- -CCgUA-GGCCGCGG-UGGaa-------GCGuuAGG- -5'
5141 5' -55.8 NC_001798.1 + 28663 0.69 0.785191
Target:  5'- cGguUCCGGCGCCGCgUggcgGCGG-CCg -3'
miRNA:   3'- cCguAGGCCGCGGUGgAag--CGUUaGG- -5'
5141 5' -55.8 NC_001798.1 + 28956 0.72 0.607487
Target:  5'- gGGC--CCGGCGCCGCCc-CGCcgcUCCg -3'
miRNA:   3'- -CCGuaGGCCGCGGUGGaaGCGuu-AGG- -5'
5141 5' -55.8 NC_001798.1 + 29002 0.7 0.728279
Target:  5'- cGGCcaaCCGcGCGCCGCCg-CGCGggCCc -3'
miRNA:   3'- -CCGua-GGC-CGCGGUGGaaGCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 31572 0.68 0.828973
Target:  5'- gGGCGcgCCGcGCGCC-CCcgCGCGG-CCg -3'
miRNA:   3'- -CCGUa-GGC-CGCGGuGGaaGCGUUaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.