miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5141 5' -55.8 NC_001798.1 + 97 0.7 0.747674
Target:  5'- gGGCAgccCCGcGCGCCcCCUUCcCcGUCCc -3'
miRNA:   3'- -CCGUa--GGC-CGCGGuGGAAGcGuUAGG- -5'
5141 5' -55.8 NC_001798.1 + 139 0.67 0.882684
Target:  5'- cGGCcgCUcccccgcgGGCGCCGCCccucccccCGCGcgCCg -3'
miRNA:   3'- -CCGuaGG--------CCGCGGUGGaa------GCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 1735 0.66 0.925748
Target:  5'- cGGCgcagGUCCcGCGCCGCCggccagCGCAc--- -3'
miRNA:   3'- -CCG----UAGGcCGCGGUGGaa----GCGUuagg -5'
5141 5' -55.8 NC_001798.1 + 2107 0.66 0.925748
Target:  5'- cGCccCCGGCGCgGCCcgCGgccaGGUCCu -3'
miRNA:   3'- cCGuaGGCCGCGgUGGaaGCg---UUAGG- -5'
5141 5' -55.8 NC_001798.1 + 2196 0.68 0.828973
Target:  5'- cGCAUCCaGGcCGCCGCgCggCGCAGcgggCCc -3'
miRNA:   3'- cCGUAGG-CC-GCGGUG-GaaGCGUUa---GG- -5'
5141 5' -55.8 NC_001798.1 + 3030 0.7 0.756276
Target:  5'- gGGC-UCCGGCcagccccggcacgGCCGCCaggUCGCcGUCg -3'
miRNA:   3'- -CCGuAGGCCG-------------CGGUGGa--AGCGuUAGg -5'
5141 5' -55.8 NC_001798.1 + 3113 0.67 0.868355
Target:  5'- aGGCAcUCCacggccacgcGGC-CCGCCUcCGCGcgCCg -3'
miRNA:   3'- -CCGU-AGG----------CCGcGGUGGAaGCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 3365 0.67 0.875627
Target:  5'- uGGCggUUGGCGUCGCCgccgUCGUcgggGGUUCg -3'
miRNA:   3'- -CCGuaGGCCGCGGUGGa---AGCG----UUAGG- -5'
5141 5' -55.8 NC_001798.1 + 3682 0.68 0.820539
Target:  5'- cGGguUCUGGaGCCACCccaUCGCcuccgcGUCCg -3'
miRNA:   3'- -CCguAGGCCgCGGUGGa--AGCGu-----UAGG- -5'
5141 5' -55.8 NC_001798.1 + 4025 0.77 0.390578
Target:  5'- uGGCGUCgCGGCcgGCCACCgccgCGCGggCCc -3'
miRNA:   3'- -CCGUAG-GCCG--CGGUGGaa--GCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 4596 0.66 0.924136
Target:  5'- aGGCGagCGG-GCCGCUUcuucuugcgcgccgUCGCGcUCCg -3'
miRNA:   3'- -CCGUagGCCgCGGUGGA--------------AGCGUuAGG- -5'
5141 5' -55.8 NC_001798.1 + 4772 0.67 0.896136
Target:  5'- cGGCAUCggcggCGGCGUCGucggccucgUCUUCGUucUCCu -3'
miRNA:   3'- -CCGUAG-----GCCGCGGU---------GGAAGCGuuAGG- -5'
5141 5' -55.8 NC_001798.1 + 4889 0.72 0.648134
Target:  5'- cGGCuggauccggagAUCCGGgGCCGCCggUCGUc-UCCg -3'
miRNA:   3'- -CCG-----------UAGGCCgCGGUGGa-AGCGuuAGG- -5'
5141 5' -55.8 NC_001798.1 + 5960 0.67 0.875627
Target:  5'- cGGCGUcCCGGuCGCCGCC---GCA--CCa -3'
miRNA:   3'- -CCGUA-GGCC-GCGGUGGaagCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 6671 0.75 0.488909
Target:  5'- cGCAggCCgGGCGCCGCCUUCGUGGa-- -3'
miRNA:   3'- cCGUa-GG-CCGCGGUGGAAGCGUUagg -5'
5141 5' -55.8 NC_001798.1 + 9144 0.67 0.868355
Target:  5'- cGGCAcgcgggCgCGGCGCCGCCcgCGCcggggggcagGGUCUc -3'
miRNA:   3'- -CCGUa-----G-GCCGCGGUGGaaGCG----------UUAGG- -5'
5141 5' -55.8 NC_001798.1 + 15105 0.7 0.757226
Target:  5'- aGGCGaggCCGGUGgCGCUgUCGUcGUCCu -3'
miRNA:   3'- -CCGUa--GGCCGCgGUGGaAGCGuUAGG- -5'
5141 5' -55.8 NC_001798.1 + 15819 0.66 0.930966
Target:  5'- aGGcCAUgaGGCGCCGCCcggUUCGgGGggcCCg -3'
miRNA:   3'- -CC-GUAggCCGCGGUGG---AAGCgUUa--GG- -5'
5141 5' -55.8 NC_001798.1 + 18607 0.66 0.930966
Target:  5'- cGgGUCCGcGCGCCGucCCgccgUGCAuagGUCCg -3'
miRNA:   3'- cCgUAGGC-CGCGGU--GGaa--GCGU---UAGG- -5'
5141 5' -55.8 NC_001798.1 + 18838 0.7 0.728279
Target:  5'- uGGUucgcCCGGCGa-ACCUUCGCAGgcuggCCg -3'
miRNA:   3'- -CCGua--GGCCGCggUGGAAGCGUUa----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.