miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5141 5' -55.8 NC_001798.1 + 154477 0.67 0.882684
Target:  5'- cGGCcgCUcccccgcgGGCGCCGCCccucccccCGCGcgCCg -3'
miRNA:   3'- -CCGuaGG--------CCGCGGUGGaa------GCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 154435 0.7 0.747674
Target:  5'- gGGCAgccCCGcGCGCCcCCUUCcCcGUCCc -3'
miRNA:   3'- -CCGUa--GGC-CGCGGuGGAAGcGuUAGG- -5'
5141 5' -55.8 NC_001798.1 + 153832 0.71 0.678515
Target:  5'- cGGCGUgCGGgGCCuCCggCGCcuUCCc -3'
miRNA:   3'- -CCGUAgGCCgCGGuGGaaGCGuuAGG- -5'
5141 5' -55.8 NC_001798.1 + 153373 0.71 0.707563
Target:  5'- cGGCcgCCgccacgcGGCGCCggaACCggUCGCGGUCg -3'
miRNA:   3'- -CCGuaGG-------CCGCGG---UGGa-AGCGUUAGg -5'
5141 5' -55.8 NC_001798.1 + 153244 0.69 0.794253
Target:  5'- cGGCGgaggacCCGcGCGCCGCCgcCGCcgccUCCu -3'
miRNA:   3'- -CCGUa-----GGC-CGCGGUGGaaGCGuu--AGG- -5'
5141 5' -55.8 NC_001798.1 + 153177 0.71 0.708557
Target:  5'- gGGCuccgCCGGCcgagGCCGCCcUCGcCGGUUCa -3'
miRNA:   3'- -CCGua--GGCCG----CGGUGGaAGC-GUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 153086 0.68 0.856286
Target:  5'- cGGCGgggCGGCGCCggGCCcUCGCGGauauauacgcggggcUCCc -3'
miRNA:   3'- -CCGUag-GCCGCGG--UGGaAGCGUU---------------AGG- -5'
5141 5' -55.8 NC_001798.1 + 152641 0.67 0.882684
Target:  5'- ----cCCGGCGCCccGCCggCGCGGcCCu -3'
miRNA:   3'- ccguaGGCCGCGG--UGGaaGCGUUaGG- -5'
5141 5' -55.8 NC_001798.1 + 150005 0.68 0.860873
Target:  5'- gGGCGagCGGCccgugGCCGCggUCGCccgAGUCCg -3'
miRNA:   3'- -CCGUagGCCG-----CGGUGgaAGCG---UUAGG- -5'
5141 5' -55.8 NC_001798.1 + 149683 0.66 0.914604
Target:  5'- gGGC--UCGGgGCCGCCcUCGCGuggcgcgucuUCCu -3'
miRNA:   3'- -CCGuaGGCCgCGGUGGaAGCGUu---------AGG- -5'
5141 5' -55.8 NC_001798.1 + 147167 0.66 0.916908
Target:  5'- gGGUAgccgcCCGGCGCCGggcggaaggcgucccCCgcccgGCGGUCCg -3'
miRNA:   3'- -CCGUa----GGCCGCGGU---------------GGaag--CGUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 147079 0.75 0.470124
Target:  5'- cGGCGgccgcccccUCCGGCGCCGCgCgUUCGCGAa-- -3'
miRNA:   3'- -CCGU---------AGGCCGCGGUG-G-AAGCGUUagg -5'
5141 5' -55.8 NC_001798.1 + 146644 0.75 0.442657
Target:  5'- gGGCAUCCGGCgGCCGgCCccaCGCccuUCCa -3'
miRNA:   3'- -CCGUAGGCCG-CGGU-GGaa-GCGuu-AGG- -5'
5141 5' -55.8 NC_001798.1 + 145561 0.7 0.728279
Target:  5'- cGCG-CCGGCGCCcCCUcccggCGCu-UCCg -3'
miRNA:   3'- cCGUaGGCCGCGGuGGAa----GCGuuAGG- -5'
5141 5' -55.8 NC_001798.1 + 145506 0.69 0.785191
Target:  5'- cGGCcgCCGcGCGCCcccgcccgGCCgcCGCGcgCCc -3'
miRNA:   3'- -CCGuaGGC-CGCGG--------UGGaaGCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 145464 0.69 0.785191
Target:  5'- cGGCcgCCGcGCGCCcccgcccgGCCgcCGCGcgCCc -3'
miRNA:   3'- -CCGuaGGC-CGCGG--------UGGaaGCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 145422 0.69 0.785191
Target:  5'- cGGCcgCCGcGCGCCcccgcccgGCCgcCGCGcgCCc -3'
miRNA:   3'- -CCGuaGGC-CGCGG--------UGGaaGCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 144515 0.71 0.688578
Target:  5'- aGGCGaguaugCCGGCGCCgACC-UCGC-GUCg -3'
miRNA:   3'- -CCGUa-----GGCCGCGG-UGGaAGCGuUAGg -5'
5141 5' -55.8 NC_001798.1 + 143392 0.72 0.607487
Target:  5'- cGCGUCCGGUGCgGuCCc-CGCAAUCg -3'
miRNA:   3'- cCGUAGGCCGCGgU-GGaaGCGUUAGg -5'
5141 5' -55.8 NC_001798.1 + 139705 0.67 0.868355
Target:  5'- uGGUcaCgGGCGCCACCgaaUCGCGGc-- -3'
miRNA:   3'- -CCGuaGgCCGCGGUGGa--AGCGUUagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.