miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5141 5' -55.8 NC_001798.1 + 139363 0.67 0.886813
Target:  5'- cGGCGUCCGGCGgggagggcUCGCGggacGUCCg -3'
miRNA:   3'- -CCGUAGGCCGCggugga--AGCGU----UAGG- -5'
5141 5' -55.8 NC_001798.1 + 138185 0.69 0.775993
Target:  5'- cGCggCCGGUGCCGCCcUUGCcgaacCCa -3'
miRNA:   3'- cCGuaGGCCGCGGUGGaAGCGuua--GG- -5'
5141 5' -55.8 NC_001798.1 + 135817 0.66 0.914604
Target:  5'- gGGCGUCauggaGGaCGCCugUgacCGCuuuGUCCu -3'
miRNA:   3'- -CCGUAGg----CC-GCGGugGaa-GCGu--UAGG- -5'
5141 5' -55.8 NC_001798.1 + 135777 0.69 0.809322
Target:  5'- cGGCcgCCGGC-CCGCCggaggaggccgugugCGCGGcCCg -3'
miRNA:   3'- -CCGuaGGCCGcGGUGGaa-------------GCGUUaGG- -5'
5141 5' -55.8 NC_001798.1 + 135547 0.68 0.837231
Target:  5'- aGGCGUCCGugcGCGCCguACUUUCGg---CCa -3'
miRNA:   3'- -CCGUAGGC---CGCGG--UGGAAGCguuaGG- -5'
5141 5' -55.8 NC_001798.1 + 135186 0.68 0.853188
Target:  5'- gGGC-UCCaGGCccagcuccugGCCGCCcUCGCGggCCu -3'
miRNA:   3'- -CCGuAGG-CCG----------CGGUGGaAGCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 135055 0.67 0.902523
Target:  5'- aGGCggCCGGcCGCCuCCUgccCGCcuUUCg -3'
miRNA:   3'- -CCGuaGGCC-GCGGuGGAa--GCGuuAGG- -5'
5141 5' -55.8 NC_001798.1 + 134917 0.67 0.868355
Target:  5'- cGGCcgCCGcCGCCGCCgagucggCGCGugaCCu -3'
miRNA:   3'- -CCGuaGGCcGCGGUGGaa-----GCGUua-GG- -5'
5141 5' -55.8 NC_001798.1 + 132181 0.67 0.898718
Target:  5'- cGCccccCCGGaCGCCACCUUCuucggggagcuggagGCGcgCCu -3'
miRNA:   3'- cCGua--GGCC-GCGGUGGAAG---------------CGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 131359 0.74 0.527478
Target:  5'- cGGCGcCCGGCGCgGCCUcggGgGAUCCc -3'
miRNA:   3'- -CCGUaGGCCGCGgUGGAag-CgUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 129466 0.68 0.853188
Target:  5'- gGGaCAUCCGGCgaaacagccGCCugGCCUUCGaCGAUa- -3'
miRNA:   3'- -CC-GUAGGCCG---------CGG--UGGAAGC-GUUAgg -5'
5141 5' -55.8 NC_001798.1 + 128834 0.67 0.902523
Target:  5'- cGCGgaccCCGGCGCC-CC--CGCGGccUCCg -3'
miRNA:   3'- cCGUa---GGCCGCGGuGGaaGCGUU--AGG- -5'
5141 5' -55.8 NC_001798.1 + 128284 0.67 0.868355
Target:  5'- cGGCAccUCUGGCGCCugacgcGCCg-CGCccccccGUCCg -3'
miRNA:   3'- -CCGU--AGGCCGCGG------UGGaaGCGu-----UAGG- -5'
5141 5' -55.8 NC_001798.1 + 128135 0.72 0.637971
Target:  5'- uGGCggaaacGUUCGaGCGCCACCUgCGCGG-CCu -3'
miRNA:   3'- -CCG------UAGGC-CGCGGUGGAaGCGUUaGG- -5'
5141 5' -55.8 NC_001798.1 + 127515 1.13 0.001861
Target:  5'- gGGCAUCCGGCGCCACCUUCGCAAUCCc -3'
miRNA:   3'- -CCGUAGGCCGCGGUGGAAGCGUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 126852 0.69 0.811935
Target:  5'- cGGCcagCUGGCGUC-CCUgcgCGCGA-CCa -3'
miRNA:   3'- -CCGua-GGCCGCGGuGGAa--GCGUUaGG- -5'
5141 5' -55.8 NC_001798.1 + 126267 0.66 0.925748
Target:  5'- gGGCGUCCGGaCGCC-Caa--GCGGcCCc -3'
miRNA:   3'- -CCGUAGGCC-GCGGuGgaagCGUUaGG- -5'
5141 5' -55.8 NC_001798.1 + 125263 0.68 0.820539
Target:  5'- cGGCGuccUCCGGCGCgCACUcccgaaacCGCAGgcgcgCCa -3'
miRNA:   3'- -CCGU---AGGCCGCG-GUGGaa------GCGUUa----GG- -5'
5141 5' -55.8 NC_001798.1 + 124298 0.68 0.837231
Target:  5'- cGCAUCaCGGC-CCACCUgcacgaggucgUCGUGggCCg -3'
miRNA:   3'- cCGUAG-GCCGcGGUGGA-----------AGCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 122475 0.7 0.738022
Target:  5'- cGGCccagaCGGCGCUGCUgcgUCGCuuUCCc -3'
miRNA:   3'- -CCGuag--GCCGCGGUGGa--AGCGuuAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.