Results 21 - 40 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5141 | 5' | -55.8 | NC_001798.1 | + | 1735 | 0.66 | 0.925748 |
Target: 5'- cGGCgcagGUCCcGCGCCGCCggccagCGCAc--- -3' miRNA: 3'- -CCG----UAGGcCGCGGUGGaa----GCGUuagg -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 126267 | 0.66 | 0.925748 |
Target: 5'- gGGCGUCCGGaCGCC-Caa--GCGGcCCc -3' miRNA: 3'- -CCGUAGGCC-GCGGuGgaagCGUUaGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 115875 | 0.66 | 0.925213 |
Target: 5'- uGGCG-CCGGCuaccauaGCCGCCgucCGCGgggcGUUCg -3' miRNA: 3'- -CCGUaGGCCG-------CGGUGGaa-GCGU----UAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 4596 | 0.66 | 0.924136 |
Target: 5'- aGGCGagCGG-GCCGCUUcuucuugcgcgccgUCGCGcUCCg -3' miRNA: 3'- -CCGUagGCCgCGGUGGA--------------AGCGUuAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 26558 | 0.66 | 0.920294 |
Target: 5'- cGCGgggCUGGCcacGCCGCCgaggCGCGAgCCc -3' miRNA: 3'- cCGUa--GGCCG---CGGUGGaa--GCGUUaGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 26188 | 0.66 | 0.920294 |
Target: 5'- cGGCGcuggacggCCGGgcCGCCGCCUcgggCGCGGgcgacgCCa -3' miRNA: 3'- -CCGUa-------GGCC--GCGGUGGAa---GCGUUa-----GG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 89304 | 0.67 | 0.896136 |
Target: 5'- cGGCccccgGUCuCGcGCGCgACCUccUCGCGcucGUCCc -3' miRNA: 3'- -CCG-----UAG-GC-CGCGgUGGA--AGCGU---UAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 104738 | 0.67 | 0.896136 |
Target: 5'- gGGCGUCCGcucuCGUCGCCgauuacCGCGG-CCa -3' miRNA: 3'- -CCGUAGGCc---GCGGUGGaa----GCGUUaGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 77400 | 0.67 | 0.896136 |
Target: 5'- uGGgGU-CGGCgGCCGCCgaccUgGUAGUCCa -3' miRNA: 3'- -CCgUAgGCCG-CGGUGGa---AgCGUUAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 77034 | 0.67 | 0.896136 |
Target: 5'- cGGCucuggCCGGCcugcaucCCGCCUUCGUggUg- -3' miRNA: 3'- -CCGua---GGCCGc------GGUGGAAGCGuuAgg -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 4772 | 0.67 | 0.896136 |
Target: 5'- cGGCAUCggcggCGGCGUCGucggccucgUCUUCGUucUCCu -3' miRNA: 3'- -CCGUAG-----GCCGCGGU---------GGAAGCGuuAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 93755 | 0.67 | 0.896136 |
Target: 5'- cGGC-UgCGGgccCGCCACCccaagUUCGCGAgcgCCg -3' miRNA: 3'- -CCGuAgGCC---GCGGUGG-----AAGCGUUa--GG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 132181 | 0.67 | 0.898718 |
Target: 5'- cGCccccCCGGaCGCCACCUUCuucggggagcuggagGCGcgCCu -3' miRNA: 3'- cCGua--GGCC-GCGGUGGAAG---------------CGUuaGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 76045 | 0.67 | 0.902523 |
Target: 5'- aGGcCAUCCaGGCGCgGCUggaggacgUGCgGAUCCa -3' miRNA: 3'- -CC-GUAGG-CCGCGgUGGaa------GCG-UUAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 135055 | 0.67 | 0.902523 |
Target: 5'- aGGCggCCGGcCGCCuCCUgccCGCcuUUCg -3' miRNA: 3'- -CCGuaGGCC-GCGGuGGAa--GCGuuAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 27937 | 0.67 | 0.902523 |
Target: 5'- cGGgGUcCCGGCGCCgGCCgcgccccggCGC--UCCa -3' miRNA: 3'- -CCgUA-GGCCGCGG-UGGaa-------GCGuuAGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 84606 | 0.67 | 0.902523 |
Target: 5'- cGGUG-CCGGUGCCccGCCgaagCGCGcgUCa -3' miRNA: 3'- -CCGUaGGCCGCGG--UGGaa--GCGUuaGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 120627 | 0.67 | 0.902523 |
Target: 5'- aGGaCGggCCGGuCGUCGCCggucUCGCGggCCu -3' miRNA: 3'- -CC-GUa-GGCC-GCGGUGGa---AGCGUuaGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 104090 | 0.67 | 0.902523 |
Target: 5'- aGGCG-CaCGaGCGCCGCCUggCGgGcgCCc -3' miRNA: 3'- -CCGUaG-GC-CGCGGUGGAa-GCgUuaGG- -5' |
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5141 | 5' | -55.8 | NC_001798.1 | + | 102355 | 0.67 | 0.890193 |
Target: 5'- uGGUcUCCGGCgGCCGCCggaagcccacccgccUgGCGGUCg -3' miRNA: 3'- -CCGuAGGCCG-CGGUGGa--------------AgCGUUAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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