Results 41 - 60 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5142 | 3' | -57.3 | NC_001798.1 | + | 44424 | 0.69 | 0.74309 |
Target: 5'- gCGGCCcaggGCgUCUUGGAGCacgGCGACGUCGu -3' miRNA: 3'- -GUUGG----CGgGGGACUUCG---UGCUGCAGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 48086 | 0.66 | 0.878245 |
Target: 5'- -cACCGCCCCaccGAGCcccACGGCGcCGu -3' miRNA: 3'- guUGGCGGGGgacUUCG---UGCUGCaGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 48435 | 0.69 | 0.694321 |
Target: 5'- -cGCCGCCCCCUcGAGuaGCGACccCGa -3' miRNA: 3'- guUGGCGGGGGA-CUUcgUGCUGcaGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 48920 | 0.71 | 0.634224 |
Target: 5'- cCAACCGCCCCCaUGGAccuguuGguCGACGaUCu -3' miRNA: 3'- -GUUGGCGGGGG-ACUU------CguGCUGC-AGc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 51119 | 0.66 | 0.868215 |
Target: 5'- gAGCCGCCCCCgcgccgucgccggGAGGCcCG-CGgUCa -3' miRNA: 3'- gUUGGCGGGGGa------------CUUCGuGCuGC-AGc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 51430 | 0.66 | 0.885155 |
Target: 5'- uGACgGCCCC--GggGCGCGGCcuuccgcgacgGUCGa -3' miRNA: 3'- gUUGgCGGGGgaCuuCGUGCUG-----------CAGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 52046 | 0.75 | 0.373361 |
Target: 5'- -uGCgCGCgCUCCUGggGCGCGACuGUCGc -3' miRNA: 3'- guUG-GCG-GGGGACuuCGUGCUG-CAGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 52076 | 0.67 | 0.81579 |
Target: 5'- uGGCCGCCCgCUacgcGggGCGCauGACGUa- -3' miRNA: 3'- gUUGGCGGGgGA----CuuCGUG--CUGCAgc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 52849 | 0.66 | 0.871122 |
Target: 5'- --cCCGcCCCCCUGAAuaGCGA-GUCc -3' miRNA: 3'- guuGGC-GGGGGACUUcgUGCUgCAGc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 52942 | 0.68 | 0.771295 |
Target: 5'- aGACCGCCgCCCUccgGgcGCACG-UGUCc -3' miRNA: 3'- gUUGGCGG-GGGA---CuuCGUGCuGCAGc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 58109 | 0.67 | 0.840615 |
Target: 5'- gCGGCCGCCCa---GGGCcCGGCGUCu -3' miRNA: 3'- -GUUGGCGGGggacUUCGuGCUGCAGc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 61878 | 0.7 | 0.654347 |
Target: 5'- cCGGCgGCCCCCUcGGGCGCGcCcUCGa -3' miRNA: 3'- -GUUGgCGGGGGAcUUCGUGCuGcAGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 66756 | 0.68 | 0.789513 |
Target: 5'- ---aCGUCCgCCUGggGUGCGGCGgCGu -3' miRNA: 3'- guugGCGGG-GGACuuCGUGCUGCaGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 72140 | 0.68 | 0.789513 |
Target: 5'- gAACCgGCCaCCCg--GGC-CGGCGUCGg -3' miRNA: 3'- gUUGG-CGG-GGGacuUCGuGCUGCAGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 72361 | 0.67 | 0.848533 |
Target: 5'- -cGCCGaCCCCCUGGuccgccAGCugGAgGaCGc -3' miRNA: 3'- guUGGC-GGGGGACU------UCGugCUgCaGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 75199 | 0.75 | 0.397929 |
Target: 5'- -cGCCGCCCCCcGGAGCccccCGGCGcCGa -3' miRNA: 3'- guUGGCGGGGGaCUUCGu---GCUGCaGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 76933 | 0.69 | 0.694321 |
Target: 5'- gGGCCcCCCCCcgGAAGuCACGGCGgCGc -3' miRNA: 3'- gUUGGcGGGGGa-CUUC-GUGCUGCaGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 77971 | 0.78 | 0.272847 |
Target: 5'- -cACCGCCUCggCUGGAGCGCGGCGUUc -3' miRNA: 3'- guUGGCGGGG--GACUUCGUGCUGCAGc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 78423 | 0.7 | 0.664386 |
Target: 5'- gGACCagaGCCCCgUGAAGaaCACGGCGUaCGc -3' miRNA: 3'- gUUGG---CGGGGgACUUC--GUGCUGCA-GC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 80806 | 0.71 | 0.604046 |
Target: 5'- -cGCCGCCCU-----GCGCGACGUCGu -3' miRNA: 3'- guUGGCGGGGgacuuCGUGCUGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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