miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5142 3' -57.3 NC_001798.1 + 44424 0.69 0.74309
Target:  5'- gCGGCCcaggGCgUCUUGGAGCacgGCGACGUCGu -3'
miRNA:   3'- -GUUGG----CGgGGGACUUCG---UGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 48086 0.66 0.878245
Target:  5'- -cACCGCCCCaccGAGCcccACGGCGcCGu -3'
miRNA:   3'- guUGGCGGGGgacUUCG---UGCUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 48435 0.69 0.694321
Target:  5'- -cGCCGCCCCCUcGAGuaGCGACccCGa -3'
miRNA:   3'- guUGGCGGGGGA-CUUcgUGCUGcaGC- -5'
5142 3' -57.3 NC_001798.1 + 48920 0.71 0.634224
Target:  5'- cCAACCGCCCCCaUGGAccuguuGguCGACGaUCu -3'
miRNA:   3'- -GUUGGCGGGGG-ACUU------CguGCUGC-AGc -5'
5142 3' -57.3 NC_001798.1 + 51119 0.66 0.868215
Target:  5'- gAGCCGCCCCCgcgccgucgccggGAGGCcCG-CGgUCa -3'
miRNA:   3'- gUUGGCGGGGGa------------CUUCGuGCuGC-AGc -5'
5142 3' -57.3 NC_001798.1 + 51430 0.66 0.885155
Target:  5'- uGACgGCCCC--GggGCGCGGCcuuccgcgacgGUCGa -3'
miRNA:   3'- gUUGgCGGGGgaCuuCGUGCUG-----------CAGC- -5'
5142 3' -57.3 NC_001798.1 + 52046 0.75 0.373361
Target:  5'- -uGCgCGCgCUCCUGggGCGCGACuGUCGc -3'
miRNA:   3'- guUG-GCG-GGGGACuuCGUGCUG-CAGC- -5'
5142 3' -57.3 NC_001798.1 + 52076 0.67 0.81579
Target:  5'- uGGCCGCCCgCUacgcGggGCGCauGACGUa- -3'
miRNA:   3'- gUUGGCGGGgGA----CuuCGUG--CUGCAgc -5'
5142 3' -57.3 NC_001798.1 + 52849 0.66 0.871122
Target:  5'- --cCCGcCCCCCUGAAuaGCGA-GUCc -3'
miRNA:   3'- guuGGC-GGGGGACUUcgUGCUgCAGc -5'
5142 3' -57.3 NC_001798.1 + 52942 0.68 0.771295
Target:  5'- aGACCGCCgCCCUccgGgcGCACG-UGUCc -3'
miRNA:   3'- gUUGGCGG-GGGA---CuuCGUGCuGCAGc -5'
5142 3' -57.3 NC_001798.1 + 58109 0.67 0.840615
Target:  5'- gCGGCCGCCCa---GGGCcCGGCGUCu -3'
miRNA:   3'- -GUUGGCGGGggacUUCGuGCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 61878 0.7 0.654347
Target:  5'- cCGGCgGCCCCCUcGGGCGCGcCcUCGa -3'
miRNA:   3'- -GUUGgCGGGGGAcUUCGUGCuGcAGC- -5'
5142 3' -57.3 NC_001798.1 + 66756 0.68 0.789513
Target:  5'- ---aCGUCCgCCUGggGUGCGGCGgCGu -3'
miRNA:   3'- guugGCGGG-GGACuuCGUGCUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 72140 0.68 0.789513
Target:  5'- gAACCgGCCaCCCg--GGC-CGGCGUCGg -3'
miRNA:   3'- gUUGG-CGG-GGGacuUCGuGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 72361 0.67 0.848533
Target:  5'- -cGCCGaCCCCCUGGuccgccAGCugGAgGaCGc -3'
miRNA:   3'- guUGGC-GGGGGACU------UCGugCUgCaGC- -5'
5142 3' -57.3 NC_001798.1 + 75199 0.75 0.397929
Target:  5'- -cGCCGCCCCCcGGAGCccccCGGCGcCGa -3'
miRNA:   3'- guUGGCGGGGGaCUUCGu---GCUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 76933 0.69 0.694321
Target:  5'- gGGCCcCCCCCcgGAAGuCACGGCGgCGc -3'
miRNA:   3'- gUUGGcGGGGGa-CUUC-GUGCUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 77971 0.78 0.272847
Target:  5'- -cACCGCCUCggCUGGAGCGCGGCGUUc -3'
miRNA:   3'- guUGGCGGGG--GACUUCGUGCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 78423 0.7 0.664386
Target:  5'- gGACCagaGCCCCgUGAAGaaCACGGCGUaCGc -3'
miRNA:   3'- gUUGG---CGGGGgACUUC--GUGCUGCA-GC- -5'
5142 3' -57.3 NC_001798.1 + 80806 0.71 0.604046
Target:  5'- -cGCCGCCCU-----GCGCGACGUCGu -3'
miRNA:   3'- guUGGCGGGGgacuuCGUGCUGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.