miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5142 3' -57.3 NC_001798.1 + 23863 0.66 0.866749
Target:  5'- aCAGCCGCCCCggccuCUGggGgGCGcccgaggcggaggagGCG-CGg -3'
miRNA:   3'- -GUUGGCGGGG-----GACuuCgUGC---------------UGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 24175 0.66 0.856261
Target:  5'- gGGCCGCUUcggcuggggCCUGgcGCACGugG-CGg -3'
miRNA:   3'- gUUGGCGGG---------GGACuuCGUGCugCaGC- -5'
5142 3' -57.3 NC_001798.1 + 24397 0.71 0.624156
Target:  5'- -cGCCGCCCCgUUGccgucGGCgGCGGCGUCGc -3'
miRNA:   3'- guUGGCGGGG-GACu----UCG-UGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 24474 0.66 0.863793
Target:  5'- -uGCuCGCCgCCCUGggGCGCcugaGCGcCGc -3'
miRNA:   3'- guUG-GCGG-GGGACuuCGUGc---UGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 24981 0.68 0.79842
Target:  5'- gAGCCugcGCCCCCUGcuGGC-CGAcacCGUCGc -3'
miRNA:   3'- gUUGG---CGGGGGACu-UCGuGCU---GCAGC- -5'
5142 3' -57.3 NC_001798.1 + 25309 0.66 0.884473
Target:  5'- uCGGCCGCCgCCCUGGAGgccuacugcgcccCGCGGgcCGUgGc -3'
miRNA:   3'- -GUUGGCGG-GGGACUUC-------------GUGCU--GCAgC- -5'
5142 3' -57.3 NC_001798.1 + 26203 0.67 0.807181
Target:  5'- gGGCCGCCgCCUcGGGCGCgGGCGaCGc -3'
miRNA:   3'- gUUGGCGGgGGAcUUCGUG-CUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 26308 0.67 0.831694
Target:  5'- -cGCCGCUgcggCCCgucuacguggcgcUGggGCGCGACGcCGu -3'
miRNA:   3'- guUGGCGG----GGG-------------ACuuCGUGCUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 26422 0.72 0.544408
Target:  5'- gCGACgCGCCCCCgcUGGugcuGCGCGACGacgCGg -3'
miRNA:   3'- -GUUG-GCGGGGG--ACUu---CGUGCUGCa--GC- -5'
5142 3' -57.3 NC_001798.1 + 26465 0.77 0.292404
Target:  5'- --cCCGCCCCCgcaGAuacGCugGGCGUCGg -3'
miRNA:   3'- guuGGCGGGGGa--CUu--CGugCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 27210 0.66 0.885155
Target:  5'- gGGaaGCCCCC-GggGCGgGGCG-CGg -3'
miRNA:   3'- gUUggCGGGGGaCuuCGUgCUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 29533 0.69 0.723803
Target:  5'- --uCCGCCCCCgccGggGCGCG-CGg-- -3'
miRNA:   3'- guuGGCGGGGGa--CuuCGUGCuGCagc -5'
5142 3' -57.3 NC_001798.1 + 31125 0.67 0.848533
Target:  5'- --cCCGCCCCCcGAagAGCGCcccGGCG-CGg -3'
miRNA:   3'- guuGGCGGGGGaCU--UCGUG---CUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 31202 0.66 0.877542
Target:  5'- cCGACCggcGCCCCCUGGcgccccgcggagcAGCagcaGCGGCGgCGc -3'
miRNA:   3'- -GUUGG---CGGGGGACU-------------UCG----UGCUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 31634 0.71 0.634224
Target:  5'- -cGCCGCCCCCgUGGugucugcgAGCGCgGACG-CGg -3'
miRNA:   3'- guUGGCGGGGG-ACU--------UCGUG-CUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 31885 0.77 0.299163
Target:  5'- --cCCGCCCCCggaaGAGGCGCGG-GUCGg -3'
miRNA:   3'- guuGGCGGGGGa---CUUCGUGCUgCAGC- -5'
5142 3' -57.3 NC_001798.1 + 34560 0.67 0.81579
Target:  5'- gAGCCuggguCCCCCggcgGAcggcucacgcGGCGCGGCGUCu -3'
miRNA:   3'- gUUGGc----GGGGGa---CU----------UCGUGCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 36131 0.68 0.771295
Target:  5'- -cGCCGCgaUCCCgccggUGggGCGCGGCGgCGg -3'
miRNA:   3'- guUGGCG--GGGG-----ACuuCGUGCUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 39780 0.71 0.584016
Target:  5'- cCGACCGCCUgguCCcGAGGCGCGACcacacgccggugGUCGc -3'
miRNA:   3'- -GUUGGCGGG---GGaCUUCGUGCUG------------CAGC- -5'
5142 3' -57.3 NC_001798.1 + 40814 0.66 0.878245
Target:  5'- gGAgCGCCCCCUGGGggccGCugGuuccGCGUUu -3'
miRNA:   3'- gUUgGCGGGGGACUU----CGugC----UGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.