miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5142 3' -57.3 NC_001798.1 + 39780 0.71 0.584016
Target:  5'- cCGACCGCCUgguCCcGAGGCGCGACcacacgccggugGUCGc -3'
miRNA:   3'- -GUUGGCGGG---GGaCUUCGUGCUG------------CAGC- -5'
5142 3' -57.3 NC_001798.1 + 139280 0.71 0.594017
Target:  5'- cCAGCCGUCCUCgGggGCGCauagcgccGCGUCGc -3'
miRNA:   3'- -GUUGGCGGGGGaCuuCGUGc-------UGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 150180 0.71 0.594017
Target:  5'- -cGCCGCCCCCUc---CGCGGCGUgGg -3'
miRNA:   3'- guUGGCGGGGGAcuucGUGCUGCAgC- -5'
5142 3' -57.3 NC_001798.1 + 115836 0.71 0.604046
Target:  5'- ---aCGCCCggggCCUGGAGCuCGGCGUUGg -3'
miRNA:   3'- guugGCGGG----GGACUUCGuGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 80806 0.71 0.604046
Target:  5'- -cGCCGCCCU-----GCGCGACGUCGu -3'
miRNA:   3'- guUGGCGGGGgacuuCGUGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 129253 0.71 0.604046
Target:  5'- cCGACUGCCCCCUGcaaccGCACcugguGACGUUc -3'
miRNA:   3'- -GUUGGCGGGGGACuu---CGUG-----CUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 24397 0.71 0.624156
Target:  5'- -cGCCGCCCCgUUGccgucGGCgGCGGCGUCGc -3'
miRNA:   3'- guUGGCGGGG-GACu----UCG-UGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 111607 0.71 0.633217
Target:  5'- gGGCgGCCUCCUGGAGCcccggggGCGgcagacucGCGUCGg -3'
miRNA:   3'- gUUGgCGGGGGACUUCG-------UGC--------UGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 31634 0.71 0.634224
Target:  5'- -cGCCGCCCCCgUGGugucugcgAGCGCgGACG-CGg -3'
miRNA:   3'- guUGGCGGGGG-ACU--------UCGUG-CUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 48920 0.71 0.634224
Target:  5'- cCAACCGCCCCCaUGGAccuguuGguCGACGaUCu -3'
miRNA:   3'- -GUUGGCGGGGG-ACUU------CguGCUGC-AGc -5'
5142 3' -57.3 NC_001798.1 + 61878 0.7 0.654347
Target:  5'- cCGGCgGCCCCCUcGGGCGCGcCcUCGa -3'
miRNA:   3'- -GUUGgCGGGGGAcUUCGUGCuGcAGC- -5'
5142 3' -57.3 NC_001798.1 + 93861 0.7 0.663383
Target:  5'- -cGCCGCCuucucggCCCUGAAGCGCG-CGg-- -3'
miRNA:   3'- guUGGCGG-------GGGACUUCGUGCuGCagc -5'
5142 3' -57.3 NC_001798.1 + 78423 0.7 0.664386
Target:  5'- gGACCagaGCCCCgUGAAGaaCACGGCGUaCGc -3'
miRNA:   3'- gUUGG---CGGGGgACUUC--GUGCUGCA-GC- -5'
5142 3' -57.3 NC_001798.1 + 95281 0.7 0.664386
Target:  5'- uGGCCuGCCCCagggccggguUUGuguGCGCGGCGUCGa -3'
miRNA:   3'- gUUGG-CGGGG----------GACuu-CGUGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 116978 0.7 0.668396
Target:  5'- cCAACUuCCCCCcggcccugcgcgaccUGgcGCGCGACGUCc -3'
miRNA:   3'- -GUUGGcGGGGG---------------ACuuCGUGCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 92901 0.7 0.684382
Target:  5'- uCAACCGCCCCCUcgcccGCcugcuguucgagGCGGuCGUCGg -3'
miRNA:   3'- -GUUGGCGGGGGAcuu--CG------------UGCU-GCAGC- -5'
5142 3' -57.3 NC_001798.1 + 48435 0.69 0.694321
Target:  5'- -cGCCGCCCCCUcGAGuaGCGACccCGa -3'
miRNA:   3'- guUGGCGGGGGA-CUUcgUGCUGcaGC- -5'
5142 3' -57.3 NC_001798.1 + 128425 0.69 0.694321
Target:  5'- aCGACCGCCUCCacgcugcggUGggGCGCGcaGgGUCc -3'
miRNA:   3'- -GUUGGCGGGGG---------ACuuCGUGC--UgCAGc -5'
5142 3' -57.3 NC_001798.1 + 76933 0.69 0.694321
Target:  5'- gGGCCcCCCCCcgGAAGuCACGGCGgCGc -3'
miRNA:   3'- gUUGGcGGGGGa-CUUC-GUGCUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 129659 0.69 0.70421
Target:  5'- ---gUGCCCCCcGAcguGCGCGugGUCa -3'
miRNA:   3'- guugGCGGGGGaCUu--CGUGCugCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.