miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5142 3' -57.3 NC_001798.1 + 24474 0.66 0.863793
Target:  5'- -uGCuCGCCgCCCUGggGCGCcugaGCGcCGc -3'
miRNA:   3'- guUG-GCGG-GGGACuuCGUGc---UGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 87984 0.66 0.863793
Target:  5'- gGACgCGCCuCCCggGggGUcggcaugcgACGGCGUCu -3'
miRNA:   3'- gUUG-GCGG-GGGa-CuuCG---------UGCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 24175 0.66 0.856261
Target:  5'- gGGCCGCUUcggcuggggCCUGgcGCACGugG-CGg -3'
miRNA:   3'- gUUGGCGGG---------GGACuuCGUGCugCaGC- -5'
5142 3' -57.3 NC_001798.1 + 72361 0.67 0.848533
Target:  5'- -cGCCGaCCCCCUGGuccgccAGCugGAgGaCGc -3'
miRNA:   3'- guUGGC-GGGGGACU------UCGugCUgCaGC- -5'
5142 3' -57.3 NC_001798.1 + 31125 0.67 0.848533
Target:  5'- --cCCGCCCCCcGAagAGCGCcccGGCG-CGg -3'
miRNA:   3'- guuGGCGGGGGaCU--UCGUG---CUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 9032 0.67 0.848533
Target:  5'- -cACCGCCCCCcGcagccagcGCACGGCGa-- -3'
miRNA:   3'- guUGGCGGGGGaCuu------CGUGCUGCagc -5'
5142 3' -57.3 NC_001798.1 + 18597 0.67 0.840615
Target:  5'- gCAGCC-CCCCCgGGuccGCGCGcCGUCc -3'
miRNA:   3'- -GUUGGcGGGGGaCUu--CGUGCuGCAGc -5'
5142 3' -57.3 NC_001798.1 + 227 0.67 0.840615
Target:  5'- --cCCGCCCCCgcgcGGCAgGACGg-- -3'
miRNA:   3'- guuGGCGGGGGacu-UCGUgCUGCagc -5'
5142 3' -57.3 NC_001798.1 + 2105 0.67 0.840615
Target:  5'- --cCCGCCCCC---GGCGCGGCccgCGg -3'
miRNA:   3'- guuGGCGGGGGacuUCGUGCUGca-GC- -5'
5142 3' -57.3 NC_001798.1 + 58109 0.67 0.840615
Target:  5'- gCGGCCGCCCa---GGGCcCGGCGUCu -3'
miRNA:   3'- -GUUGGCGGGggacUUCGuGCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 91837 0.67 0.840615
Target:  5'- -cGCCGCCCCUcccAGCACGcCGUa- -3'
miRNA:   3'- guUGGCGGGGGacuUCGUGCuGCAgc -5'
5142 3' -57.3 NC_001798.1 + 110916 0.67 0.840615
Target:  5'- cCAGCCGCCCCCgccGGCcCG-CGgUCa -3'
miRNA:   3'- -GUUGGCGGGGGacuUCGuGCuGC-AGc -5'
5142 3' -57.3 NC_001798.1 + 154565 0.67 0.840615
Target:  5'- --cCCGCCCCCgcgcGGCAgGACGg-- -3'
miRNA:   3'- guuGGCGGGGGacu-UCGUgCUGCagc -5'
5142 3' -57.3 NC_001798.1 + 26308 0.67 0.831694
Target:  5'- -cGCCGCUgcggCCCgucuacguggcgcUGggGCGCGACGcCGu -3'
miRNA:   3'- guUGGCGG----GGG-------------ACuuCGUGCUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 9629 0.67 0.824236
Target:  5'- gGGCCGCCCCCagcaccgccccGAGGCGCaGCGg-- -3'
miRNA:   3'- gUUGGCGGGGGa----------CUUCGUGcUGCagc -5'
5142 3' -57.3 NC_001798.1 + 101957 0.67 0.824236
Target:  5'- gGACCGCCCCggauagagGAGGCcccggggggGCGAUGUgCGg -3'
miRNA:   3'- gUUGGCGGGGga------CUUCG---------UGCUGCA-GC- -5'
5142 3' -57.3 NC_001798.1 + 120655 0.67 0.824236
Target:  5'- gGGCCuGCCCCCcgaUGAucuccuGCAUGAaggaGUCGg -3'
miRNA:   3'- gUUGG-CGGGGG---ACUu-----CGUGCUg---CAGC- -5'
5142 3' -57.3 NC_001798.1 + 5575 0.67 0.824236
Target:  5'- -cGCCGgCCCCaaaGggGCcgGCGAgGUCGc -3'
miRNA:   3'- guUGGCgGGGGa--CuuCG--UGCUgCAGC- -5'
5142 3' -57.3 NC_001798.1 + 52076 0.67 0.81579
Target:  5'- uGGCCGCCCgCUacgcGggGCGCauGACGUa- -3'
miRNA:   3'- gUUGGCGGGgGA----CuuCGUG--CUGCAgc -5'
5142 3' -57.3 NC_001798.1 + 34560 0.67 0.81579
Target:  5'- gAGCCuggguCCCCCggcgGAcggcucacgcGGCGCGGCGUCu -3'
miRNA:   3'- gUUGGc----GGGGGa---CU----------UCGUGCUGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.