miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5142 3' -57.3 NC_001798.1 + 52076 0.67 0.81579
Target:  5'- uGGCCGCCCgCUacgcGggGCGCauGACGUa- -3'
miRNA:   3'- gUUGGCGGGgGA----CuuCGUG--CUGCAgc -5'
5142 3' -57.3 NC_001798.1 + 141419 0.67 0.81579
Target:  5'- aGAgCGCCCCCUucAGCACcuACGUgGa -3'
miRNA:   3'- gUUgGCGGGGGAcuUCGUGc-UGCAgC- -5'
5142 3' -57.3 NC_001798.1 + 87872 0.67 0.813224
Target:  5'- aGGCCGCCCCCaGcAGGUGCGAgaaguaauaguccgUGUUGa -3'
miRNA:   3'- gUUGGCGGGGGaC-UUCGUGCU--------------GCAGC- -5'
5142 3' -57.3 NC_001798.1 + 106279 0.67 0.807181
Target:  5'- aCGACCuuguCCCCCgGAGGCGCGAgCGa-- -3'
miRNA:   3'- -GUUGGc---GGGGGaCUUCGUGCU-GCagc -5'
5142 3' -57.3 NC_001798.1 + 26203 0.67 0.807181
Target:  5'- gGGCCGCCgCCUcGGGCGCgGGCGaCGc -3'
miRNA:   3'- gUUGGCGGgGGAcUUCGUG-CUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 24981 0.68 0.79842
Target:  5'- gAGCCugcGCCCCCUGcuGGC-CGAcacCGUCGc -3'
miRNA:   3'- gUUGG---CGGGGGACu-UCGuGCU---GCAGC- -5'
5142 3' -57.3 NC_001798.1 + 137765 0.68 0.79842
Target:  5'- cCAGCUcguGCUCCCaGAGGCGCGACa--- -3'
miRNA:   3'- -GUUGG---CGGGGGaCUUCGUGCUGcagc -5'
5142 3' -57.3 NC_001798.1 + 7787 0.68 0.79842
Target:  5'- -cACCGCCCCCgcuggcgGGAGC-CaGgGUCGg -3'
miRNA:   3'- guUGGCGGGGGa------CUUCGuGcUgCAGC- -5'
5142 3' -57.3 NC_001798.1 + 84609 0.68 0.789513
Target:  5'- -uGCCgguGCCCCgCcGAAGCGCG-CGUCa -3'
miRNA:   3'- guUGG---CGGGG-GaCUUCGUGCuGCAGc -5'
5142 3' -57.3 NC_001798.1 + 66756 0.68 0.789513
Target:  5'- ---aCGUCCgCCUGggGUGCGGCGgCGu -3'
miRNA:   3'- guugGCGGG-GGACuuCGUGCUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 72140 0.68 0.789513
Target:  5'- gAACCgGCCaCCCg--GGC-CGGCGUCGg -3'
miRNA:   3'- gUUGG-CGG-GGGacuUCGuGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 4137 0.68 0.784102
Target:  5'- -cGCCGCCCCC-GggGCccucGCGGgcacccccgccuccuCGUCGu -3'
miRNA:   3'- guUGGCGGGGGaCuuCG----UGCU---------------GCAGC- -5'
5142 3' -57.3 NC_001798.1 + 7966 0.68 0.780468
Target:  5'- gCAugCGCCUUCUGGugcuuuuggcGCACG-CGUCGa -3'
miRNA:   3'- -GUugGCGGGGGACUu---------CGUGCuGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 9553 0.68 0.780468
Target:  5'- uUAACCGCCCgCCaGGAGCGCcuGCGcCa -3'
miRNA:   3'- -GUUGGCGGG-GGaCUUCGUGc-UGCaGc -5'
5142 3' -57.3 NC_001798.1 + 137687 0.68 0.780468
Target:  5'- gCGAUCGCCCCgCUaGAGUACGAgaUCGa -3'
miRNA:   3'- -GUUGGCGGGG-GAcUUCGUGCUgcAGC- -5'
5142 3' -57.3 NC_001798.1 + 138799 0.68 0.780468
Target:  5'- ---aCGCCCCC--AGGCGCuGCGUCGc -3'
miRNA:   3'- guugGCGGGGGacUUCGUGcUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 143018 0.68 0.77498
Target:  5'- aUAACCGCCCgcagcugcucgcgcaCCU---GCGCGGCGUUGg -3'
miRNA:   3'- -GUUGGCGGG---------------GGAcuuCGUGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 91631 0.68 0.771295
Target:  5'- cCGGCCGCCCggguGAGCGUGACGUCa -3'
miRNA:   3'- -GUUGGCGGGggacUUCGUGCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 52942 0.68 0.771295
Target:  5'- aGACCGCCgCCCUccgGgcGCACG-UGUCc -3'
miRNA:   3'- gUUGGCGG-GGGA---CuuCGUGCuGCAGc -5'
5142 3' -57.3 NC_001798.1 + 36131 0.68 0.771295
Target:  5'- -cGCCGCgaUCCCgccggUGggGCGCGGCGgCGg -3'
miRNA:   3'- guUGGCG--GGGG-----ACuuCGUGCUGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.