miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5142 3' -57.3 NC_001798.1 + 127250 1.09 0.002246
Target:  5'- aCAACCGCCCCCUGAAGCACGACGUCGg -3'
miRNA:   3'- -GUUGGCGGGGGACUUCGUGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 137138 0.83 0.130799
Target:  5'- gCAACCGCCCCCUGggGgu-GACGUCa -3'
miRNA:   3'- -GUUGGCGGGGGACuuCgugCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 153062 0.83 0.140806
Target:  5'- -cGCCGCCCCCUGggGCgggcggaGCGGCGgggCGg -3'
miRNA:   3'- guUGGCGGGGGACuuCG-------UGCUGCa--GC- -5'
5142 3' -57.3 NC_001798.1 + 88065 0.82 0.164174
Target:  5'- gGGCuCGUCCCCUGggGCGgCGGCGUCu -3'
miRNA:   3'- gUUG-GCGGGGGACuuCGU-GCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 131333 0.78 0.272847
Target:  5'- -cGCCGCCCgCgccccGGGCGCGACGUCGg -3'
miRNA:   3'- guUGGCGGGgGac---UUCGUGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 77971 0.78 0.272847
Target:  5'- -cACCGCCUCggCUGGAGCGCGGCGUUc -3'
miRNA:   3'- guUGGCGGGG--GACUUCGUGCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 26465 0.77 0.292404
Target:  5'- --cCCGCCCCCgcaGAuacGCugGGCGUCGg -3'
miRNA:   3'- guuGGCGGGGGa--CUu--CGugCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 31885 0.77 0.299163
Target:  5'- --cCCGCCCCCggaaGAGGCGCGG-GUCGg -3'
miRNA:   3'- guuGGCGGGGGa---CUUCGUGCUgCAGC- -5'
5142 3' -57.3 NC_001798.1 + 134391 0.76 0.334762
Target:  5'- -cGCCGCCCuCCUGGacguggaggccaAGguCGACGUCGa -3'
miRNA:   3'- guUGGCGGG-GGACU------------UCguGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 52046 0.75 0.373361
Target:  5'- -uGCgCGCgCUCCUGggGCGCGACuGUCGc -3'
miRNA:   3'- guUG-GCG-GGGGACuuCGUGCUG-CAGC- -5'
5142 3' -57.3 NC_001798.1 + 23078 0.75 0.389625
Target:  5'- --gUCGCCCCCcccGGAGCGCGACGgcgCGc -3'
miRNA:   3'- guuGGCGGGGGa--CUUCGUGCUGCa--GC- -5'
5142 3' -57.3 NC_001798.1 + 75199 0.75 0.397929
Target:  5'- -cGCCGCCCCCcGGAGCccccCGGCGcCGa -3'
miRNA:   3'- guUGGCGGGGGaCUUCGu---GCUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 95518 0.74 0.432253
Target:  5'- cCAcCCGCgCCCUGGAGCGCgggcauggcgaGugGUCGa -3'
miRNA:   3'- -GUuGGCGgGGGACUUCGUG-----------CugCAGC- -5'
5142 3' -57.3 NC_001798.1 + 147081 0.74 0.45005
Target:  5'- gCGGCCGCCCCCUccGGCGCcGCG-CGu -3'
miRNA:   3'- -GUUGGCGGGGGAcuUCGUGcUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 100310 0.74 0.459099
Target:  5'- aCAGCCGCCCCCUGGucagcuuucGGUACGAa---- -3'
miRNA:   3'- -GUUGGCGGGGGACU---------UCGUGCUgcagc -5'
5142 3' -57.3 NC_001798.1 + 1521 0.73 0.486807
Target:  5'- cCGGCCGUCCagcgCCgGGAGCACGGCG-CGg -3'
miRNA:   3'- -GUUGGCGGG----GGaCUUCGUGCUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 3999 0.73 0.496218
Target:  5'- gGGCCGCCCggCCgUGAAGCGgcccgUGGCGUCGc -3'
miRNA:   3'- gUUGGCGGG--GG-ACUUCGU-----GCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 26422 0.72 0.544408
Target:  5'- gCGACgCGCCCCCgcUGGugcuGCGCGACGacgCGg -3'
miRNA:   3'- -GUUG-GCGGGGG--ACUu---CGUGCUGCa--GC- -5'
5142 3' -57.3 NC_001798.1 + 89398 0.71 0.583017
Target:  5'- cCGGCCGCuCCCCUuccccccGAGGCACGGCcgggCGc -3'
miRNA:   3'- -GUUGGCG-GGGGA-------CUUCGUGCUGca--GC- -5'
5142 3' -57.3 NC_001798.1 + 92993 0.71 0.584016
Target:  5'- gCGGCCGCCCaCCUGgcGUuCGACGa-- -3'
miRNA:   3'- -GUUGGCGGG-GGACuuCGuGCUGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.