miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5142 3' -57.3 NC_001798.1 + 227 0.67 0.840615
Target:  5'- --cCCGCCCCCgcgcGGCAgGACGg-- -3'
miRNA:   3'- guuGGCGGGGGacu-UCGUgCUGCagc -5'
5142 3' -57.3 NC_001798.1 + 1521 0.73 0.486807
Target:  5'- cCGGCCGUCCagcgCCgGGAGCACGGCG-CGg -3'
miRNA:   3'- -GUUGGCGGG----GGaCUUCGUGCUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 2105 0.67 0.840615
Target:  5'- --cCCGCCCCC---GGCGCGGCccgCGg -3'
miRNA:   3'- guuGGCGGGGGacuUCGUGCUGca-GC- -5'
5142 3' -57.3 NC_001798.1 + 2992 0.66 0.885155
Target:  5'- cCGGcCCGCgggCCCCgggcgcgGggGCGCGGCGggcCGg -3'
miRNA:   3'- -GUU-GGCG---GGGGa------CuuCGUGCUGCa--GC- -5'
5142 3' -57.3 NC_001798.1 + 3833 0.69 0.74309
Target:  5'- uCGGgCGCCCCCcaGAGGCcgggGCGGCuGUCGc -3'
miRNA:   3'- -GUUgGCGGGGGa-CUUCG----UGCUG-CAGC- -5'
5142 3' -57.3 NC_001798.1 + 3999 0.73 0.496218
Target:  5'- gGGCCGCCCggCCgUGAAGCGgcccgUGGCGUCGc -3'
miRNA:   3'- gUUGGCGGG--GG-ACUUCGU-----GCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 4137 0.68 0.784102
Target:  5'- -cGCCGCCCCC-GggGCccucGCGGgcacccccgccuccuCGUCGu -3'
miRNA:   3'- guUGGCGGGGGaCuuCG----UGCU---------------GCAGC- -5'
5142 3' -57.3 NC_001798.1 + 4754 0.66 0.878245
Target:  5'- gGGCCGCCUCgUcGGcaucggcaucGGCgGCGGCGUCGu -3'
miRNA:   3'- gUUGGCGGGGgA-CU----------UCG-UGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 5575 0.67 0.824236
Target:  5'- -cGCCGgCCCCaaaGggGCcgGCGAgGUCGc -3'
miRNA:   3'- guUGGCgGGGGa--CuuCG--UGCUgCAGC- -5'
5142 3' -57.3 NC_001798.1 + 7787 0.68 0.79842
Target:  5'- -cACCGCCCCCgcuggcgGGAGC-CaGgGUCGg -3'
miRNA:   3'- guUGGCGGGGGa------CUUCGuGcUgCAGC- -5'
5142 3' -57.3 NC_001798.1 + 7966 0.68 0.780468
Target:  5'- gCAugCGCCUUCUGGugcuuuuggcGCACG-CGUCGa -3'
miRNA:   3'- -GUugGCGGGGGACUu---------CGUGCuGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 9032 0.67 0.848533
Target:  5'- -cACCGCCCCCcGcagccagcGCACGGCGa-- -3'
miRNA:   3'- guUGGCGGGGGaCuu------CGUGCUGCagc -5'
5142 3' -57.3 NC_001798.1 + 9553 0.68 0.780468
Target:  5'- uUAACCGCCCgCCaGGAGCGCcuGCGcCa -3'
miRNA:   3'- -GUUGGCGGG-GGaCUUCGUGc-UGCaGc -5'
5142 3' -57.3 NC_001798.1 + 9629 0.67 0.824236
Target:  5'- gGGCCGCCCCCagcaccgccccGAGGCGCaGCGg-- -3'
miRNA:   3'- gUUGGCGGGGGa----------CUUCGUGcUGCagc -5'
5142 3' -57.3 NC_001798.1 + 15830 0.66 0.885155
Target:  5'- -cGCCGCCCgguUCggGggGCcCGaACGUCGg -3'
miRNA:   3'- guUGGCGGG---GGa-CuuCGuGC-UGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 18597 0.67 0.840615
Target:  5'- gCAGCC-CCCCCgGGuccGCGCGcCGUCc -3'
miRNA:   3'- -GUUGGcGGGGGaCUu--CGUGCuGCAGc -5'
5142 3' -57.3 NC_001798.1 + 21944 0.68 0.762002
Target:  5'- --cCCGCCCCCUuugggcGGAGCGCgggauGACG-CGg -3'
miRNA:   3'- guuGGCGGGGGA------CUUCGUG-----CUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 22322 0.68 0.771295
Target:  5'- gGGCCGCCgCCacggacgcgGAcGCGCGgGCGUCGg -3'
miRNA:   3'- gUUGGCGGgGGa--------CUuCGUGC-UGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 23078 0.75 0.389625
Target:  5'- --gUCGCCCCCcccGGAGCGCGACGgcgCGc -3'
miRNA:   3'- guuGGCGGGGGa--CUUCGUGCUGCa--GC- -5'
5142 3' -57.3 NC_001798.1 + 23825 0.69 0.74309
Target:  5'- --cCCGCCCCC-GggGCGCGugcUGUaCGg -3'
miRNA:   3'- guuGGCGGGGGaCuuCGUGCu--GCA-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.