miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5142 3' -57.3 NC_001798.1 + 154565 0.67 0.840615
Target:  5'- --cCCGCCCCCgcgcGGCAgGACGg-- -3'
miRNA:   3'- guuGGCGGGGGacu-UCGUgCUGCagc -5'
5142 3' -57.3 NC_001798.1 + 153062 0.83 0.140806
Target:  5'- -cGCCGCCCCCUGggGCgggcggaGCGGCGgggCGg -3'
miRNA:   3'- guUGGCGGGGGACuuCG-------UGCUGCa--GC- -5'
5142 3' -57.3 NC_001798.1 + 150901 0.69 0.723803
Target:  5'- -cGCCGCCCCCgcgccGggGCGCucuucggggGGCGggCGg -3'
miRNA:   3'- guUGGCGGGGGa----CuuCGUG---------CUGCa-GC- -5'
5142 3' -57.3 NC_001798.1 + 150180 0.71 0.594017
Target:  5'- -cGCCGCCCCCUc---CGCGGCGUgGg -3'
miRNA:   3'- guUGGCGGGGGAcuucGUGCUGCAgC- -5'
5142 3' -57.3 NC_001798.1 + 150071 0.67 0.81579
Target:  5'- uGGCCcccaCCCCCUGggGgGCGAgGggCGa -3'
miRNA:   3'- gUUGGc---GGGGGACuuCgUGCUgCa-GC- -5'
5142 3' -57.3 NC_001798.1 + 149152 0.66 0.885155
Target:  5'- --cCUGCCCCC-GAGGCGCcucggccgGugGUCc -3'
miRNA:   3'- guuGGCGGGGGaCUUCGUG--------CugCAGc -5'
5142 3' -57.3 NC_001798.1 + 147213 0.68 0.762002
Target:  5'- cCGGCCcggGCCCCCggcGGAGCGCGGgGgcccCGg -3'
miRNA:   3'- -GUUGG---CGGGGGa--CUUCGUGCUgCa---GC- -5'
5142 3' -57.3 NC_001798.1 + 147081 0.74 0.45005
Target:  5'- gCGGCCGCCCCCUccGGCGCcGCG-CGu -3'
miRNA:   3'- -GUUGGCGGGGGAcuUCGUGcUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 143018 0.68 0.77498
Target:  5'- aUAACCGCCCgcagcugcucgcgcaCCU---GCGCGGCGUUGg -3'
miRNA:   3'- -GUUGGCGGG---------------GGAcuuCGUGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 142483 0.68 0.762002
Target:  5'- gGACgGCCCCCgagGcGGCGCGGgGgugCGa -3'
miRNA:   3'- gUUGgCGGGGGa--CuUCGUGCUgCa--GC- -5'
5142 3' -57.3 NC_001798.1 + 141419 0.67 0.81579
Target:  5'- aGAgCGCCCCCUucAGCACcuACGUgGa -3'
miRNA:   3'- gUUgGCGGGGGAcuUCGUGc-UGCAgC- -5'
5142 3' -57.3 NC_001798.1 + 139280 0.71 0.594017
Target:  5'- cCAGCCGUCCUCgGggGCGCauagcgccGCGUCGc -3'
miRNA:   3'- -GUUGGCGGGGGaCuuCGUGc-------UGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 138799 0.68 0.780468
Target:  5'- ---aCGCCCCC--AGGCGCuGCGUCGc -3'
miRNA:   3'- guugGCGGGGGacUUCGUGcUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 138158 0.69 0.733489
Target:  5'- ---gCGCCCCCggguccugGggGCGCGACccgCGg -3'
miRNA:   3'- guugGCGGGGGa-------CuuCGUGCUGca-GC- -5'
5142 3' -57.3 NC_001798.1 + 137765 0.68 0.79842
Target:  5'- cCAGCUcguGCUCCCaGAGGCGCGACa--- -3'
miRNA:   3'- -GUUGG---CGGGGGaCUUCGUGCUGcagc -5'
5142 3' -57.3 NC_001798.1 + 137687 0.68 0.780468
Target:  5'- gCGAUCGCCCCgCUaGAGUACGAgaUCGa -3'
miRNA:   3'- -GUUGGCGGGG-GAcUUCGUGCUgcAGC- -5'
5142 3' -57.3 NC_001798.1 + 137138 0.83 0.130799
Target:  5'- gCAACCGCCCCCUGggGgu-GACGUCa -3'
miRNA:   3'- -GUUGGCGGGGGACuuCgugCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 135594 0.66 0.885155
Target:  5'- --cUCGCCCCCUcccuGGCGCcagagGGCGUCu -3'
miRNA:   3'- guuGGCGGGGGAcu--UCGUG-----CUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 135288 0.68 0.771295
Target:  5'- gCGGCCGCCCCCUcGGAGccCugGGCc-CGg -3'
miRNA:   3'- -GUUGGCGGGGGA-CUUC--GugCUGcaGC- -5'
5142 3' -57.3 NC_001798.1 + 134391 0.76 0.334762
Target:  5'- -cGCCGCCCuCCUGGacguggaggccaAGguCGACGUCGa -3'
miRNA:   3'- guUGGCGGG-GGACU------------UCguGCUGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.