miRNA display CGI


Results 41 - 60 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5144 3' -56.4 NC_001798.1 + 17711 0.66 0.901474
Target:  5'- cGCGCCu-CGU--GGCuCGugcuGGCGUACCa -3'
miRNA:   3'- -CGCGGcuGCAaaCCG-GCu---CUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 19499 0.66 0.919162
Target:  5'- cCGCUGGCcgUUGGCgaCGAGugGCcuCCg -3'
miRNA:   3'- cGCGGCUGcaAACCG--GCUCugCGu-GG- -5'
5144 3' -56.4 NC_001798.1 + 20478 0.68 0.811721
Target:  5'- aGCGCCGgugcGCGUgcgcgaUccccggaagacUGGCCGGGGCcugggguuGCGCCg -3'
miRNA:   3'- -CGCGGC----UGCA------A-----------ACCGGCUCUG--------CGUGG- -5'
5144 3' -56.4 NC_001798.1 + 22141 0.69 0.803058
Target:  5'- gGgGCCGGCGgg-GGCCaacGGGAgCGCgggGCCg -3'
miRNA:   3'- -CgCGGCUGCaaaCCGG---CUCU-GCG---UGG- -5'
5144 3' -56.4 NC_001798.1 + 22290 0.7 0.757667
Target:  5'- cGCGCgGGCGgagcGGCgGcGGCGCgACCa -3'
miRNA:   3'- -CGCGgCUGCaaa-CCGgCuCUGCG-UGG- -5'
5144 3' -56.4 NC_001798.1 + 22344 0.74 0.501829
Target:  5'- cGCGCgGGCGUcgGGgCGGGGcCGCGCa -3'
miRNA:   3'- -CGCGgCUGCAaaCCgGCUCU-GCGUGg -5'
5144 3' -56.4 NC_001798.1 + 22391 0.67 0.895126
Target:  5'- gGCGgaaccCCGGCGa---GCCGGGGCGCGgCg -3'
miRNA:   3'- -CGC-----GGCUGCaaacCGGCUCUGCGUgG- -5'
5144 3' -56.4 NC_001798.1 + 22739 0.68 0.83674
Target:  5'- aGgGCCG-CGg--GGCCGAGGuCGCGa- -3'
miRNA:   3'- -CgCGGCuGCaaaCCGGCUCU-GCGUgg -5'
5144 3' -56.4 NC_001798.1 + 22874 0.67 0.888557
Target:  5'- cCGCCGcGCGgcccgGGuUCGGGugGCACg -3'
miRNA:   3'- cGCGGC-UGCaaa--CC-GGCUCugCGUGg -5'
5144 3' -56.4 NC_001798.1 + 22919 0.68 0.84473
Target:  5'- aCGaaGACGa--GGCCGAcGACGcCGCCg -3'
miRNA:   3'- cGCggCUGCaaaCCGGCU-CUGC-GUGG- -5'
5144 3' -56.4 NC_001798.1 + 22953 0.67 0.860146
Target:  5'- cGUGCCGACGaggcGGCCccGGCGUccggggagGCCg -3'
miRNA:   3'- -CGCGGCUGCaaa-CCGGcuCUGCG--------UGG- -5'
5144 3' -56.4 NC_001798.1 + 23357 0.66 0.919162
Target:  5'- cCGCCGGCGcucGGCCGccucuGACuCAUCa -3'
miRNA:   3'- cGCGGCUGCaaaCCGGCu----CUGcGUGG- -5'
5144 3' -56.4 NC_001798.1 + 23561 0.67 0.895126
Target:  5'- gGUGCCcGCGag-GGCCccgGGGGCgGCGCCc -3'
miRNA:   3'- -CGCGGcUGCaaaCCGG---CUCUG-CGUGG- -5'
5144 3' -56.4 NC_001798.1 + 23659 0.71 0.679939
Target:  5'- aGCGCCGccgggcccgcGCGgcggUGGCCGGccgcGACGCcacggGCCg -3'
miRNA:   3'- -CGCGGC----------UGCaa--ACCGGCU----CUGCG-----UGG- -5'
5144 3' -56.4 NC_001798.1 + 23840 0.66 0.9246
Target:  5'- cGUGCUGuACGgcgGGCUG-GGCGacaGCCg -3'
miRNA:   3'- -CGCGGC-UGCaaaCCGGCuCUGCg--UGG- -5'
5144 3' -56.4 NC_001798.1 + 24415 0.71 0.659957
Target:  5'- gGCGgCGGCGUcgccGGCCGAcGAgCGCGCg -3'
miRNA:   3'- -CGCgGCUGCAaa--CCGGCU-CU-GCGUGg -5'
5144 3' -56.4 NC_001798.1 + 24514 0.71 0.669963
Target:  5'- cGCGCCGGCcgg-GGCCGAcGACG-ACg -3'
miRNA:   3'- -CGCGGCUGcaaaCCGGCU-CUGCgUGg -5'
5144 3' -56.4 NC_001798.1 + 24551 0.76 0.428819
Target:  5'- gGCGCCGGCGguggUGGCgGcggccGGCGCGCg -3'
miRNA:   3'- -CGCGGCUGCaa--ACCGgCu----CUGCGUGg -5'
5144 3' -56.4 NC_001798.1 + 24637 0.68 0.82857
Target:  5'- gGCGCUGGCGgagGGCUucGACgGCgACCu -3'
miRNA:   3'- -CGCGGCUGCaaaCCGGcuCUG-CG-UGG- -5'
5144 3' -56.4 NC_001798.1 + 24673 0.67 0.86756
Target:  5'- cGUGCCGG-GgcUGGCCG-GAgcccggcccgcCGCGCCc -3'
miRNA:   3'- -CGCGGCUgCaaACCGGCuCU-----------GCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.