miRNA display CGI


Results 21 - 40 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5144 3' -56.4 NC_001798.1 + 4113 0.7 0.729081
Target:  5'- -gGCCcugGGCGggcucGGCCGGGGCGcCGCCc -3'
miRNA:   3'- cgCGG---CUGCaaa--CCGGCUCUGC-GUGG- -5'
5144 3' -56.4 NC_001798.1 + 4200 0.66 0.9246
Target:  5'- cGCGgCGugGUcugcggcgcUGGCgGGGGCGCGg- -3'
miRNA:   3'- -CGCgGCugCAa--------ACCGgCUCUGCGUgg -5'
5144 3' -56.4 NC_001798.1 + 4358 0.72 0.629842
Target:  5'- aGCGCCGGCGg------GGGGCGCGCCg -3'
miRNA:   3'- -CGCGGCUGCaaaccggCUCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 4403 0.66 0.907597
Target:  5'- gGUGUCGGCGgg-GcGCCGGGGguCGCGgCg -3'
miRNA:   3'- -CGCGGCUGCaaaC-CGGCUCU--GCGUgG- -5'
5144 3' -56.4 NC_001798.1 + 5384 0.66 0.913494
Target:  5'- cGCGuCCGugGcggcGGCCcguuGGuCGCGCCg -3'
miRNA:   3'- -CGC-GGCugCaaa-CCGGc---UCuGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 5955 0.7 0.729081
Target:  5'- aGgGCCGGCGUcccGGUCGccGcCGCACCa -3'
miRNA:   3'- -CgCGGCUGCAaa-CCGGCu-CuGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 6058 0.73 0.559958
Target:  5'- aCGCCGGCGgcgagcggGGCaccGACGCACCc -3'
miRNA:   3'- cGCGGCUGCaaa-----CCGgcuCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 6266 0.71 0.699769
Target:  5'- cGgGCCGGgGggacgGGCCGgggGGACGgGCCg -3'
miRNA:   3'- -CgCGGCUgCaaa--CCGGC---UCUGCgUGG- -5'
5144 3' -56.4 NC_001798.1 + 6305 0.71 0.699769
Target:  5'- cGgGCCGGgGggacgGGCCGgggGGACGgGCCg -3'
miRNA:   3'- -CgCGGCUgCaaa--CCGGC---UCUGCgUGG- -5'
5144 3' -56.4 NC_001798.1 + 6344 0.71 0.699769
Target:  5'- cGgGCCGGgGggacgGGCCGgggGGACGgGCCg -3'
miRNA:   3'- -CgCGGCUgCaaa--CCGGC---UCUGCgUGG- -5'
5144 3' -56.4 NC_001798.1 + 8887 0.72 0.619797
Target:  5'- gGCGCUGGCGgagGGCgGAGGCGaaggugggguUGCCg -3'
miRNA:   3'- -CGCGGCUGCaaaCCGgCUCUGC----------GUGG- -5'
5144 3' -56.4 NC_001798.1 + 9228 0.67 0.86756
Target:  5'- uCGCCGACGUccGcGUCGucggaAGACGCcuuACCa -3'
miRNA:   3'- cGCGGCUGCAaaC-CGGC-----UCUGCG---UGG- -5'
5144 3' -56.4 NC_001798.1 + 9845 0.69 0.785291
Target:  5'- -gGCCGGCGUgcugGGggGAGGCGUGCUg -3'
miRNA:   3'- cgCGGCUGCAaa--CCggCUCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 12263 0.68 0.83674
Target:  5'- cCGCgGACGaccaGGCCGGuGGCGCAgacCCa -3'
miRNA:   3'- cGCGgCUGCaaa-CCGGCU-CUGCGU---GG- -5'
5144 3' -56.4 NC_001798.1 + 12734 0.69 0.794245
Target:  5'- gGCG-CGACGUccUGGaucgaCGGGAUGUGCCa -3'
miRNA:   3'- -CGCgGCUGCAa-ACCg----GCUCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 15044 0.69 0.766994
Target:  5'- aGCGUgGgGCGgaugGGcCCGGGGCGCGCg -3'
miRNA:   3'- -CGCGgC-UGCaaa-CC-GGCUCUGCGUGg -5'
5144 3' -56.4 NC_001798.1 + 15307 0.69 0.803058
Target:  5'- gGCGaCCGAaaCGUUggcGGCCGAGG-GCcCCg -3'
miRNA:   3'- -CGC-GGCU--GCAAa--CCGGCUCUgCGuGG- -5'
5144 3' -56.4 NC_001798.1 + 15376 0.73 0.559958
Target:  5'- -gGCCGugGgcgcGGCgGAGGCGC-CCa -3'
miRNA:   3'- cgCGGCugCaaa-CCGgCUCUGCGuGG- -5'
5144 3' -56.4 NC_001798.1 + 16166 0.7 0.756728
Target:  5'- aGCGCC-ACGggcGGCCcgcggggaccgggGGGACGCACg -3'
miRNA:   3'- -CGCGGcUGCaaaCCGG-------------CUCUGCGUGg -5'
5144 3' -56.4 NC_001798.1 + 16219 0.69 0.794245
Target:  5'- cGCGCCGccuguggggggGCGguggGGCCGGGGCccucccCGCCc -3'
miRNA:   3'- -CGCGGC-----------UGCaaa-CCGGCUCUGc-----GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.