miRNA display CGI


Results 21 - 40 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5144 3' -56.4 NC_001798.1 + 28351 0.76 0.427946
Target:  5'- uGCGCCGGCGgc-GGCCccccGcguccccgcccgcGGACGCGCCg -3'
miRNA:   3'- -CGCGGCUGCaaaCCGG----C-------------UCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 24551 0.76 0.428819
Target:  5'- gGCGCCGGCGguggUGGCgGcggccGGCGCGCg -3'
miRNA:   3'- -CGCGGCUGCaa--ACCGgCu----CUGCGUGg -5'
5144 3' -56.4 NC_001798.1 + 37165 0.75 0.437608
Target:  5'- cGCGCCGcCuGgcgGGCCGcucGGCGCGCCa -3'
miRNA:   3'- -CGCGGCuG-CaaaCCGGCu--CUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 1390 0.75 0.45549
Target:  5'- aGCGCC-ACGUagacgGGCCGcagcGGCGCGCCc -3'
miRNA:   3'- -CGCGGcUGCAaa---CCGGCu---CUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 116953 0.75 0.464577
Target:  5'- gGCGCCGACcacgUGGCCa--ACGCGCCc -3'
miRNA:   3'- -CGCGGCUGcaa-ACCGGcucUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 52499 0.75 0.476531
Target:  5'- cGCGCCGGCGcagggacgacgcggcGGCCGc-GCGCGCCg -3'
miRNA:   3'- -CGCGGCUGCaaa------------CCGGCucUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 67832 0.74 0.491449
Target:  5'- gGCGaaGACGUgagGGCUcgcaggaGAGugGCGCCg -3'
miRNA:   3'- -CGCggCUGCAaa-CCGG-------CUCugCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 125717 0.74 0.492388
Target:  5'- cGCGCgggggCGGCGagaUGaGCCGAGACGcCGCCa -3'
miRNA:   3'- -CGCG-----GCUGCaa-AC-CGGCUCUGC-GUGG- -5'
5144 3' -56.4 NC_001798.1 + 55007 0.74 0.501829
Target:  5'- uUGCCGGCGg--GGCCGcccugccgggAGACGCcCCg -3'
miRNA:   3'- cGCGGCUGCaaaCCGGC----------UCUGCGuGG- -5'
5144 3' -56.4 NC_001798.1 + 22344 0.74 0.501829
Target:  5'- cGCGCgGGCGUcgGGgCGGGGcCGCGCa -3'
miRNA:   3'- -CGCGgCUGCAaaCCgGCUCU-GCGUGg -5'
5144 3' -56.4 NC_001798.1 + 146474 0.74 0.501829
Target:  5'- aGCGCCG-CGggcuccggGGCCGGGcCGgGCCg -3'
miRNA:   3'- -CGCGGCuGCaaa-----CCGGCUCuGCgUGG- -5'
5144 3' -56.4 NC_001798.1 + 97453 0.74 0.508484
Target:  5'- uGCGCCG-CGUgcuggcgcggcugggGGCCGGcGGCGCgACCg -3'
miRNA:   3'- -CGCGGCuGCAaa-------------CCGGCU-CUGCG-UGG- -5'
5144 3' -56.4 NC_001798.1 + 25953 0.74 0.511348
Target:  5'- uGCGCCGuGCGc-UGGCCGGcGGCGCgggACCu -3'
miRNA:   3'- -CGCGGC-UGCaaACCGGCU-CUGCG---UGG- -5'
5144 3' -56.4 NC_001798.1 + 70065 0.74 0.511348
Target:  5'- cGCGCCG-CGUc--GCCGAGcGCGCACg -3'
miRNA:   3'- -CGCGGCuGCAaacCGGCUC-UGCGUGg -5'
5144 3' -56.4 NC_001798.1 + 39575 0.74 0.527698
Target:  5'- cGCGCCGACGcggggUGGCgacccccuuggUugugggcguuucugGAGACGCGCCg -3'
miRNA:   3'- -CGCGGCUGCaa---ACCG-----------G--------------CUCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 152650 0.73 0.540331
Target:  5'- cCGCCGGCGc--GGCCcuGAGugGUGCCc -3'
miRNA:   3'- cGCGGCUGCaaaCCGG--CUCugCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 104753 0.73 0.540331
Target:  5'- uCGCCGAUuaccgcGGCC-AGACGCGCCa -3'
miRNA:   3'- cGCGGCUGcaaa--CCGGcUCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 26529 0.73 0.550118
Target:  5'- gGCGgCGGCGUggaggUGGUgGGGAC-CGCCg -3'
miRNA:   3'- -CGCgGCUGCAa----ACCGgCUCUGcGUGG- -5'
5144 3' -56.4 NC_001798.1 + 142179 0.73 0.559958
Target:  5'- cGCGCgguucUGACGcggGGUCGAG-CGCGCCa -3'
miRNA:   3'- -CGCG-----GCUGCaaaCCGGCUCuGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 6058 0.73 0.559958
Target:  5'- aCGCCGGCGgcgagcggGGCaccGACGCACCc -3'
miRNA:   3'- cGCGGCUGCaaa-----CCGgcuCUGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.